Analysis of interatomic Contacts of Structural Units in PDB entry:
4F5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F5D entry

There are 2 chains in PDB entry 4F5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 153GLU 340
B
 PHE 153GLU 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4F5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
155 167Right-handed alpha
Helix 2
2
A
167 187Right-handed alpha
Helix 3
3
A
211 216Right-handed alpha
Helix 4
4
A
262 272Right-handed alpha
Helix 5
5
A
280 282Right-handed 310
Helix 6
6
A
283 301Right-handed alpha
Helix 7
7
A
324 340Right-handed alpha
Helix 8
8
B
155 167Right-handed alpha
Helix 9
9
B
167 187Right-handed alpha
Helix 10
10
B
211 216Right-handed alpha
Helix 11
11
B
262 272Right-handed alpha
Helix 12
12
B
280 282Right-handed 310
Helix 13
13
B
283 301Right-handed alpha
Helix 14
14
B
324 338Right-handed alpha
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There are 2 sheets in PDB entry 4F5D. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 230first strand
Strand 2
A
238 249anti-parallel
Strand 3
A
252 261anti-parallel
Strand 4
A
194 203parallel
Strand 5
A
309 314parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 230first strand
Strand 2
B
238 249anti-parallel
Strand 3
B
252 261anti-parallel
Strand 4
B
194 203parallel
Strand 5
B
309 314parallel
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