Analysis of interatomic Contacts of Structural Units in PDB entry:
4F5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F5F entry

There are 4 chains in PDB entry 4F5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 8SER 255
A
 ASN 257LEU 406
B
 HIS 7SER 255
B
 ASN 257LEU 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 4F5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 32Right-handed alpha
Helix 2
2
A
56 70Right-handed alpha
Helix 3
3
A
81 94Right-handed alpha
Helix 4
4
A
97 102Right-handed alpha
Helix 5
5
A
112 128Right-handed alpha
Helix 6
6
A
142 150Right-handed alpha
Helix 7
7
A
168 176Right-handed alpha
Helix 8
8
A
177 179Right-handed 310
Helix 9
9
A
200 215Right-handed alpha
Helix 10
10
A
230 235Right-handed alpha
Helix 11
11
A
235 245Right-handed alpha
Helix 12
12
A
260 263Right-handed 310
Helix 13
13
A
274 291Right-handed alpha
Helix 14
14
A
297 309Right-handed alpha
Helix 15
15
A
310 342Right-handed alpha
Helix 16
16
A
348 354Right-handed 310
Helix 17
17
A
364 376Right-handed alpha
Helix 18
18
A
388 390Right-handed 310
Helix 19
19
A
391 406Right-handed alpha
Helix 20
20
B
21 32Right-handed alpha
Helix 21
21
B
56 70Right-handed alpha
Helix 22
22
B
81 94Right-handed alpha
Helix 23
23
B
97 102Right-handed alpha
Helix 24
24
B
112 128Right-handed alpha
Helix 25
25
B
142 150Right-handed alpha
Helix 26
26
B
168 176Right-handed alpha
Helix 27
27
B
177 179Right-handed 310
Helix 28
28
B
200 215Right-handed alpha
Helix 29
29
B
232 234Right-handed 310
Helix 30
30
B
235 245Right-handed alpha
Helix 31
31
B
260 263Right-handed 310
Helix 32
32
B
274 291Right-handed alpha
Helix 33
33
B
297 309Right-handed alpha
Helix 34
34
B
310 342Right-handed alpha
Helix 35
35
B
348 352Right-handed 310
Helix 36
36
B
364 376Right-handed alpha
Helix 37
37
B
388 390Right-handed 310
Helix 38
38
B
394 406Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4F5F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
377 378parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 111first strand
Strand 2
A
265 271anti-parallel
Strand 3
A
248 253anti-parallel
Strand 4
A
217 222parallel
Strand 5
A
184 188parallel
Strand 6
A
132 136parallel
Strand 7
A
153 157parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
166 167anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 360first strand
Strand 2
A
384 386anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
377 378parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 111first strand
Strand 2
B
265 271anti-parallel
Strand 3
B
248 253anti-parallel
Strand 4
B
217 222parallel
Strand 5
B
184 188parallel
Strand 6
B
132 137parallel
Strand 7
B
153 158parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
166 167anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 360first strand
Strand 2
B
384 386anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il