Analysis of interatomic Contacts of Structural Units in PDB entry:
4F5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F5Y entry

There are 2 chains in PDB entry 4F5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 151VAL 343
B
 GLY 151VAL 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4F5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
154 167Right-handed alpha
Helix 2
2
A
167 191Right-handed alpha
Helix 3
3
A
263 274Right-handed alpha
Helix 4
4
A
275 278Right-handed 310
Helix 5
5
A
280 301Right-handed alpha
Helix 6
6
A
305 307Right-handed 310
Helix 7
7
A
324 343Right-handed alpha
Helix 8
8
B
154 166Right-handed alpha
Helix 9
9
B
167 172Right-handed alpha
Helix 10
10
B
174 191Right-handed alpha
Helix 11
11
B
211 216Right-handed alpha
Helix 12
12
B
263 272Right-handed alpha
Helix 13
13
B
273 278Right-handed 310
Helix 14
14
B
280 301Right-handed alpha
Helix 15
15
B
305 307Right-handed 310
Helix 16
16
B
324 343Right-handed alpha
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There are 2 sheets in PDB entry 4F5Y. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 224first strand
Strand 2
A
243 249anti-parallel
Strand 3
A
252 261anti-parallel
Strand 4
A
198 203parallel
Strand 5
A
309 314parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 224first strand
Strand 2
B
243 249anti-parallel
Strand 3
B
252 261anti-parallel
Strand 4
B
198 203parallel
Strand 5
B
309 314parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il