Analysis of interatomic Contacts of Structural Units in PDB entry:
4F61

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4F61 entry

There are 3 chains in PDB entry 4F61 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 438
B	MET 1	GLU 442
C	MET 1	ASP 424

There are171 helices in PDB entry 4F61. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	10	29	Right-handed alpha
Helix 2	2	A	47	51	Right-handed 310
Helix 3	3	A	72	81	Right-handed alpha
Helix 4	4	A	88	90	Right-handed 310
Helix 5	5	A	102	108	Right-handed alpha
Helix 6	6	A	110	128	Right-handed alpha
Helix 7	7	A	143	161	Right-handed alpha
Helix 8	8	A	182	195	Right-handed alpha
Helix 9	9	A	206	218	Right-handed alpha
Helix 10	10	A	223	244	Right-handed alpha
Helix 11	11	A	251	260	Right-handed alpha
Helix 12	12	A	287	295	Right-handed alpha
Helix 13	13	A	296	301	Right-handed 310
Helix 14	14	A	306	310	Right-handed 310
Helix 15	15	A	324	339	Right-handed alpha
Helix 16	16	A	384	400	Right-handed alpha
Helix 17	17	A	404	410	Right-handed alpha
Helix 18	18	A	414	437	Right-handed alpha
Helix 19	19	B	10	28	Right-handed alpha
Helix 20	20	B	41	48	Right-handed alpha
Helix 21	21	B	49	51	Right-handed 310
Helix 22	22	B	72	81	Right-handed alpha
Helix 23	23	B	83	87	Right-handed 310
Helix 24	24	B	88	90	Right-handed 310
Helix 25	25	B	102	108	Right-handed alpha
Helix 26	26	B	109	128	Right-handed alpha
Helix 27	27	B	144	161	Right-handed alpha
Helix 28	28	B	174	178	Right-handed 310
Helix 29	29	B	182	198	Right-handed alpha
Helix 30	30	B	206	216	Right-handed alpha
Helix 31	31	B	223	244	Right-handed alpha
Helix 32	32	B	251	260	Right-handed alpha
Helix 33	33	B	287	294	Right-handed alpha
Helix 34	34	B	295	296	Right-handed 310
Helix 35	35	B	297	301	Right-handed 310
Helix 36	36	B	306	310	Right-handed 310
Helix 37	37	B	324	339	Right-handed alpha
Helix 38	38	B	340	343	Right-handed 310
Helix 39	39	B	384	400	Right-handed alpha
Helix 40	40	B	405	410	Right-handed alpha
Helix 41	41	B	414	438	Right-handed alpha
Helix 42	42	C	10	29	Right-handed alpha
Helix 43	43	C	47	51	Right-handed 310
Helix 44	44	C	72	81	Right-handed alpha
Helix 45	45	C	88	90	Right-handed 310
Helix 46	46	C	102	108	Right-handed alpha
Helix 47	47	C	110	128	Right-handed alpha
Helix 48	48	C	143	162	Right-handed alpha
Helix 49	49	C	182	195	Right-handed alpha
Helix 50	50	C	206	218	Right-handed alpha
Helix 51	51	C	223	244	Right-handed alpha
Helix 52	52	C	251	260	Right-handed alpha
Helix 53	53	C	287	295	Right-handed alpha
Helix 54	54	C	296	301	Right-handed 310
Helix 55	55	C	306	310	Right-handed 310
Helix 56	56	C	324	337	Right-handed alpha
Helix 57	57	C	384	400	Right-handed alpha
Helix 58	58	C	404	410	Right-handed alpha
Helix 59	59	C	414	437	Right-handed alpha
Helix 60	60	D	10	28	Right-handed alpha
Helix 61	61	D	41	48	Right-handed alpha
Helix 62	62	D	49	51	Right-handed 310
Helix 63	63	D	72	81	Right-handed alpha
Helix 64	64	D	83	87	Right-handed 310
Helix 65	65	D	88	90	Right-handed 310
Helix 66	66	D	102	108	Right-handed alpha
Helix 67	67	D	109	128	Right-handed alpha
Helix 68	68	D	144	161	Right-handed alpha
Helix 69	69	D	174	178	Right-handed 310
Helix 70	70	D	182	198	Right-handed alpha
Helix 71	71	D	206	216	Right-handed alpha
Helix 72	72	D	223	244	Right-handed alpha
Helix 73	73	D	251	260	Right-handed alpha
Helix 74	74	D	287	294	Right-handed alpha
Helix 75	75	D	295	296	Right-handed 310
Helix 76	76	D	297	301	Right-handed 310
Helix 77	77	D	306	310	Right-handed 310
Helix 78	78	D	324	339	Right-handed alpha
Helix 79	79	D	340	343	Right-handed 310
Helix 80	80	D	384	400	Right-handed alpha
Helix 81	81	D	405	410	Right-handed alpha
Helix 82	82	D	414	438	Right-handed alpha
Helix 83	83	E	10	29	Right-handed alpha
Helix 84	84	E	47	51	Right-handed 310
Helix 85	85	E	72	79	Right-handed alpha
Helix 86	86	E	88	90	Right-handed 310
Helix 87	87	E	102	108	Right-handed alpha
Helix 88	88	E	110	128	Right-handed alpha
Helix 89	89	E	143	162	Right-handed alpha
Helix 90	90	E	182	195	Right-handed alpha
Helix 91	91	E	206	218	Right-handed alpha
Helix 92	92	E	223	244	Right-handed alpha
Helix 93	93	E	251	260	Right-handed alpha
Helix 94	94	E	287	295	Right-handed alpha
Helix 95	95	E	296	301	Right-handed 310
Helix 96	96	E	306	310	Right-handed 310
Helix 97	97	E	324	337	Right-handed alpha
Helix 98	98	E	384	400	Right-handed alpha
Helix 99	99	E	404	410	Right-handed alpha
Helix 100	100	E	414	437	Right-handed alpha
Helix 101	101	F	10	28	Right-handed alpha
Helix 102	102	F	41	48	Right-handed alpha
Helix 103	103	F	49	51	Right-handed 310
Helix 104	104	F	72	81	Right-handed alpha
Helix 105	105	F	83	87	Right-handed 310
Helix 106	106	F	88	90	Right-handed 310
Helix 107	107	F	102	108	Right-handed alpha
Helix 108	108	F	109	128	Right-handed alpha
Helix 109	109	F	144	161	Right-handed alpha
Helix 110	110	F	174	178	Right-handed 310
Helix 111	111	F	182	198	Right-handed alpha
Helix 112	112	F	206	216	Right-handed alpha
Helix 113	113	F	223	244	Right-handed alpha
Helix 114	114	F	251	260	Right-handed alpha
Helix 115	115	F	287	294	Right-handed alpha
Helix 116	116	F	295	296	Right-handed 310
Helix 117	117	F	297	301	Right-handed 310
Helix 118	118	F	306	310	Right-handed 310
Helix 119	119	F	324	339	Right-handed alpha
Helix 120	120	F	340	343	Right-handed 310
Helix 121	121	F	384	400	Right-handed alpha
Helix 122	122	F	405	410	Right-handed alpha
Helix 123	123	F	414	438	Right-handed alpha
Helix 124	124	G	10	29	Right-handed alpha
Helix 125	125	G	47	51	Right-handed 310
Helix 126	126	G	72	79	Right-handed alpha
Helix 127	127	G	88	90	Right-handed 310
Helix 128	128	G	102	108	Right-handed alpha
Helix 129	129	G	110	128	Right-handed alpha
Helix 130	130	G	143	162	Right-handed alpha
Helix 131	131	G	182	195	Right-handed alpha
Helix 132	132	G	206	218	Right-handed alpha
Helix 133	133	G	223	244	Right-handed alpha
Helix 134	134	G	251	260	Right-handed alpha
Helix 135	135	G	287	295	Right-handed alpha
Helix 136	136	G	296	301	Right-handed 310
Helix 137	137	G	306	310	Right-handed 310
Helix 138	138	G	324	337	Right-handed alpha
Helix 139	139	G	384	400	Right-handed alpha
Helix 140	140	G	404	410	Right-handed alpha
Helix 141	141	G	414	437	Right-handed alpha
Helix 142	142	H	10	28	Right-handed alpha
Helix 143	143	H	41	48	Right-handed alpha
Helix 144	144	H	49	51	Right-handed 310
Helix 145	145	H	72	81	Right-handed alpha
Helix 146	146	H	83	87	Right-handed 310
Helix 147	147	H	88	90	Right-handed 310
Helix 148	148	H	102	108	Right-handed alpha
Helix 149	149	H	109	128	Right-handed alpha
Helix 150	150	H	144	161	Right-handed alpha
Helix 151	151	H	182	198	Right-handed alpha
Helix 152	152	H	206	216	Right-handed alpha
Helix 153	153	H	223	244	Right-handed alpha
Helix 154	154	H	251	260	Right-handed alpha
Helix 155	155	H	287	294	Right-handed alpha
Helix 156	156	H	295	296	Right-handed 310
Helix 157	157	H	297	301	Right-handed 310
Helix 158	158	H	306	310	Right-handed 310
Helix 159	159	H	324	339	Right-handed alpha
Helix 160	160	H	340	343	Right-handed 310
Helix 161	161	H	384	400	Right-handed alpha
Helix 162	162	H	405	410	Right-handed alpha
Helix 163	163	H	414	438	Right-handed alpha
Helix 164	164	I	46	72	Right-handed alpha
Helix 165	165	I	73	123	Right-handed alpha
Helix 166	166	I	124	164	Right-handed alpha
Helix 167	167	I	165	167	Right-handed 310
Helix 168	168	I	168	185	Right-handed alpha
Helix 169	169	I	186	191	Right-handed alpha
Helix 170	170	I	191	217	Right-handed alpha
Helix 171	171	I	218	241	Right-handed alpha

There are 20 sheets in PDB entry 4F61. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	4	9	parallel
Strand 4	A	134	140	parallel
Strand 5	A	165	172	parallel
Strand 6	A	200	205	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	349	356	parallel
Strand 5	I	18	25	anti-parallel
Strand 6	I	7	13	anti-parallel

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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	3	9	parallel
Strand 4	B	132	140	parallel
Strand 5	B	165	172	parallel
Strand 6	B	200	205	parallel
Strand 7	B	267	273	parallel
Strand 8	B	373	381	anti-parallel
Strand 9	B	312	321	anti-parallel
Strand 10	B	351	356	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	61	63	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	65	69	parallel
Strand 3	C	4	9	parallel
Strand 4	C	134	140	parallel
Strand 5	C	165	172	parallel
Strand 6	C	200	205	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	61	63	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	273	first strand
Strand 2	C	373	381	anti-parallel
Strand 3	C	312	321	anti-parallel
Strand 4	C	351	356	parallel

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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	94	first strand
Strand 2	D	65	69	parallel
Strand 3	D	3	9	parallel
Strand 4	D	132	140	parallel
Strand 5	D	165	172	parallel
Strand 6	D	200	205	parallel
Strand 7	D	267	273	parallel
Strand 8	D	373	381	anti-parallel
Strand 9	D	312	321	anti-parallel
Strand 10	D	351	356	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	61	63	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	65	69	parallel
Strand 3	E	4	9	parallel
Strand 4	E	134	140	parallel
Strand 5	E	165	172	parallel
Strand 6	E	200	205	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	61	63	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	273	first strand
Strand 2	E	373	381	anti-parallel
Strand 3	E	312	321	anti-parallel
Strand 4	E	351	356	parallel

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There are 10 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	94	first strand
Strand 2	F	65	69	parallel
Strand 3	F	3	9	parallel
Strand 4	F	132	140	parallel
Strand 5	F	165	172	parallel
Strand 6	F	200	205	parallel
Strand 7	F	267	273	parallel
Strand 8	F	373	381	anti-parallel
Strand 9	F	312	321	anti-parallel
Strand 10	F	351	356	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	55	first strand
Strand 2	F	61	63	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	94	first strand
Strand 2	G	65	69	parallel
Strand 3	G	4	9	parallel
Strand 4	G	134	140	parallel
Strand 5	G	165	172	parallel
Strand 6	G	200	205	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	61	63	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	273	first strand
Strand 2	G	373	381	anti-parallel
Strand 3	G	312	321	anti-parallel
Strand 4	G	351	356	parallel

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There are 10 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	92	94	first strand
Strand 2	H	65	69	parallel
Strand 3	H	3	9	parallel
Strand 4	H	132	140	parallel
Strand 5	H	165	172	parallel
Strand 6	H	200	205	parallel
Strand 7	H	267	273	parallel
Strand 8	H	373	381	anti-parallel
Strand 9	H	312	321	anti-parallel
Strand 10	H	351	356	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	55	first strand
Strand 2	H	61	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4F61

Analysis of interatomic Contacts of Structural Units in PDB entry:
4F61