Analysis of interatomic Contacts of Structural Units in PDB entry:
4F6P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F6P entry

There is 1 chain in PDB entry 4F6P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 93MET 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 4F6P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
154 168Right-handed alpha
Helix 2
2
A
173 175Right-handed 310
Helix 3
3
A
186 190Right-handed 310
Helix 4
4
A
192 205Right-handed alpha
Helix 5
5
A
243 248Right-handed alpha
Helix 6
6
A
252 260Right-handed alpha
Helix 7
7
A
379 392Right-handed alpha
Helix 8
8
A
396 409Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4F6P. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
126 127anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 181first strand
Strand 2
A
136 142parallel
Strand 3
A
212 218parallel
Strand 4
A
268 273parallel
Strand 5
A
355 362parallel
Strand 6
A
415 420anti-parallel
Strand 7
A
286 289anti-parallel
Strand 8
A
292 295anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
238 239anti-parallel
Strand 3
A
250 251anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il