Analysis of interatomic Contacts of Structural Units in PDB entry:
4F6R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F6R entry

There are 4 chains in PDB entry 4F6R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 437
B
 MET 1ASP 441
C
 ASN 12GLU 90
D
 GLY 11ASN 169
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 4F6R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 29Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
72 81Right-handed alpha
Helix 4
4
A
88 90Right-handed 310
Helix 5
5
A
102 108Right-handed alpha
Helix 6
6
A
110 127Right-handed alpha
Helix 7
7
A
143 161Right-handed alpha
Helix 8
8
A
182 195Right-handed alpha
Helix 9
9
A
196 198Right-handed 310
Helix 10
10
A
206 218Right-handed alpha
Helix 11
11
A
223 244Right-handed alpha
Helix 12
12
A
251 260Right-handed alpha
Helix 13
13
A
287 295Right-handed alpha
Helix 14
14
A
296 301Right-handed 310
Helix 15
15
A
306 310Right-handed 310
Helix 16
16
A
324 339Right-handed alpha
Helix 17
17
A
384 400Right-handed alpha
Helix 18
18
A
404 410Right-handed alpha
Helix 19
19
A
414 435Right-handed alpha
Helix 20
20
B
10 28Right-handed alpha
Helix 21
21
B
41 48Right-handed alpha
Helix 22
22
B
49 51Right-handed 310
Helix 23
23
B
72 80Right-handed alpha
Helix 24
24
B
88 90Right-handed 310
Helix 25
25
B
102 108Right-handed alpha
Helix 26
26
B
109 128Right-handed alpha
Helix 27
27
B
144 161Right-handed alpha
Helix 28
28
B
182 198Right-handed alpha
Helix 29
29
B
206 216Right-handed alpha
Helix 30
30
B
223 244Right-handed alpha
Helix 31
31
B
251 260Right-handed alpha
Helix 32
32
B
287 296Right-handed alpha
Helix 33
33
B
297 301Right-handed 310
Helix 34
34
B
306 310Right-handed 310
Helix 35
35
B
324 339Right-handed alpha
Helix 36
36
B
340 343Right-handed 310
Helix 37
37
B
384 401Right-handed alpha
Helix 38
38
B
405 410Right-handed alpha
Helix 39
39
B
414 438Right-handed alpha
Helix 40
40
C
46 87Right-handed alpha
Helix 41
41
D
12 25Right-handed alpha
Helix 42
42
D
26 36Right-handed alpha
Helix 43
43
D
49 58Right-handed alpha
Helix 44
44
D
59 69Right-handed alpha
Helix 45
45
D
82 91Right-handed alpha
Helix 46
46
D
92 102Right-handed alpha
Helix 47
47
D
115 124Right-handed alpha
Helix 48
48
D
125 135Right-handed alpha
Helix 49
49
D
148 157Right-handed alpha
Helix 50
50
D
158 167Right-handed alpha
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There are 5 sheets in PDB entry 4F6R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
349 356parallel
Strand 5
C
17 25anti-parallel
Strand 6
C
13 14anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 273parallel
Strand 8
B
373 381anti-parallel
Strand 9
B
312 321anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
61 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il