Analysis of interatomic Contacts of Structural Units in PDB entry:
4F7D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F7D entry

There are 2 chains in PDB entry 4F7D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 17VAL 270
B
 MET 16ASP 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4F7D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
89 96Right-handed alpha
Helix 2
2
A
115 119Right-handed 310
Helix 3
3
A
133 141Right-handed alpha
Helix 4
4
A
143 150Right-handed alpha
Helix 5
5
A
161 174Right-handed alpha
Helix 6
6
A
180 188Right-handed alpha
Helix 7
7
A
206 212Right-handed alpha
Helix 8
8
A
214 219Right-handed alpha
Helix 9
9
A
236 249Right-handed alpha
Helix 10
10
B
89 96Right-handed alpha
Helix 11
11
B
115 119Right-handed 310
Helix 12
12
B
133 141Right-handed alpha
Helix 13
13
B
143 150Right-handed alpha
Helix 14
14
B
161 173Right-handed alpha
Helix 15
15
B
180 188Right-handed alpha
Helix 16
16
B
206 212Right-handed alpha
Helix 17
17
B
213 219Right-handed alpha
Helix 18
18
B
236 250Right-handed alpha
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There are 4 sheets in PDB entry 4F7D. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 69first strand
Strand 2
A
52 59anti-parallel
Strand 3
A
103 107anti-parallel
Strand 4
A
19 29anti-parallel
Strand 5
B
19 29anti-parallel
Strand 6
B
103 107anti-parallel
Strand 7
B
52 59anti-parallel
Strand 8
B
62 69anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
19 29anti-parallel
Strand 4
B
19 29anti-parallel
Strand 5
B
34 40anti-parallel
Strand 6
B
78 84anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
152 157parallel
Strand 3
A
124 129parallel
Strand 4
A
229 235parallel
Strand 5
A
263 267parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 193first strand
Strand 2
B
152 157parallel
Strand 3
B
124 129parallel
Strand 4
B
229 235parallel
Strand 5
B
263 267parallel
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