Analysis of interatomic Contacts of Structural Units in PDB entry:
4F7U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4F7U entry

There are 12 chains in PDB entry 4F7U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1001	ASP 1082
B	GLU 2022	LEU 2114
C	LYS 1002	ASP 1082
D	LEU 2016	PRO 2113
E	VAL 3013	VAL 3090
H	MET 3014	SER 3091
F	PRO 4004	GLU 4076
I	LEU 4003	GLU 4076
G	PRO 5007	GLU 5074
J	GLU 5008	GLU 5074
Q	MET 6001	HIS 6162
P	MET 6001	HIS 6160

There are 16 helices in PDB entry 4F7U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1003	1008	Right-handed alpha
Helix 2	2	A	1075	1080	Right-handed alpha
Helix 3	3	B	2023	2027	Right-handed alpha
Helix 4	4	B	2029	2038	Right-handed alpha
Helix 5	5	C	1003	1008	Right-handed alpha
Helix 6	6	C	1075	1080	Right-handed alpha
Helix 7	7	D	2017	2027	Right-handed alpha
Helix 8	8	D	2029	2039	Right-handed alpha
Helix 9	9	E	3016	3028	Right-handed alpha
Helix 10	10	H	3016	3028	Right-handed alpha
Helix 11	11	F	4006	4015	Right-handed alpha
Helix 12	12	I	4006	4014	Right-handed alpha
Helix 13	13	G	5007	5013	Right-handed 310
Helix 14	14	J	5009	5013	Right-handed 310
Helix 15	15	Q	6144	6160	Right-handed alpha
Helix 16	16	P	6144	6160	Right-handed alpha

There are 2 sheets in PDB entry 4F7U. Click on sheet of interest to get list of strands forming it: A, B,

There are 34 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1014	1019	first strand
Strand 2	A	1024	1032	anti-parallel
Strand 3	A	1038	1046	anti-parallel
Strand 4	A	1053	1060	anti-parallel
Strand 5	P	6060	6067	anti-parallel
Strand 6	P	6071	6077	anti-parallel
Strand 7	P	6134	6140	anti-parallel
Strand 8	P	6014	6025	anti-parallel
Strand 9	P	6028	6038	anti-parallel
Strand 10	P	6041	6046	anti-parallel
Strand 11	P	6052	6056	anti-parallel
Strand 12	P	6002	6005	anti-parallel
Strand 13	G	5067	5072	parallel
Strand 14	G	5016	5021	anti-parallel
Strand 15	G	5025	5034	anti-parallel
Strand 16	G	5040	5048	anti-parallel
Strand 17	G	5054	5062	anti-parallel
Strand 18	E	3084	3089	anti-parallel
Strand 19	E	3030	3035	anti-parallel
Strand 20	E	3041	3050	anti-parallel
Strand 21	E	3056	3065	anti-parallel
Strand 22	E	3070	3079	anti-parallel
Strand 23	F	4069	4074	anti-parallel
Strand 24	F	4018	4023	anti-parallel
Strand 25	F	4028	4036	anti-parallel
Strand 26	F	4042	4051	anti-parallel
Strand 27	F	4054	4064	anti-parallel
Strand 28	B	2106	2110	anti-parallel
Strand 29	B	2041	2046	anti-parallel
Strand 30	B	2051	2059	anti-parallel
Strand 31	B	2065	2074	anti-parallel
Strand 32	B	2092	2101	anti-parallel
Strand 33	A	1065	1069	anti-parallel
Strand 34	A	1014	1019	anti-parallel

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There are 34 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1014	1019	first strand
Strand 2	C	1024	1032	anti-parallel
Strand 3	C	1038	1046	anti-parallel
Strand 4	C	1053	1060	anti-parallel
Strand 5	Q	6060	6067	anti-parallel
Strand 6	Q	6071	6077	anti-parallel
Strand 7	Q	6134	6140	anti-parallel
Strand 8	Q	6014	6025	anti-parallel
Strand 9	Q	6029	6038	anti-parallel
Strand 10	Q	6041	6046	anti-parallel
Strand 11	Q	6052	6056	anti-parallel
Strand 12	Q	6002	6005	anti-parallel
Strand 13	J	5067	5072	parallel
Strand 14	J	5016	5021	anti-parallel
Strand 15	J	5025	5034	anti-parallel
Strand 16	J	5039	5048	anti-parallel
Strand 17	J	5054	5063	anti-parallel
Strand 18	H	3084	3089	anti-parallel
Strand 19	H	3030	3035	anti-parallel
Strand 20	H	3041	3050	anti-parallel
Strand 21	H	3056	3065	anti-parallel
Strand 22	H	3070	3079	anti-parallel
Strand 23	I	4069	4074	anti-parallel
Strand 24	I	4018	4023	anti-parallel
Strand 25	I	4028	4036	anti-parallel
Strand 26	I	4042	4051	anti-parallel
Strand 27	I	4054	4064	anti-parallel
Strand 28	D	2106	2111	anti-parallel
Strand 29	D	2042	2046	anti-parallel
Strand 30	D	2050	2059	anti-parallel
Strand 31	D	2065	2074	anti-parallel
Strand 32	D	2092	2101	anti-parallel
Strand 33	C	1065	1069	anti-parallel
Strand 34	C	1014	1019	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4F7U

Analysis of interatomic Contacts of Structural Units in PDB entry:
4F7U