Analysis of interatomic Contacts of Structural Units in PDB entry:
4F86

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4F86 entry

There are 12 chains in PDB entry 4F86 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 26	VAL 300
B	THR 27	VAL 300
C	THR 27	VAL 300
D	PRO 25	VAL 300
E	THR 27	VAL 300
F	THR 27	VAL 300
G	PRO 28	VAL 300
H	THR 27	VAL 300
I	PRO 28	VAL 300
J	THR 27	VAL 300
K	PRO 43	VAL 300
L	ALA 26	VAL 300

There are143 helices in PDB entry 4F86. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	27	38	Right-handed alpha
Helix 2	2	A	42	51	Right-handed alpha
Helix 3	3	A	65	69	Right-handed 310
Helix 4	4	A	76	98	Right-handed alpha
Helix 5	5	A	117	128	Right-handed alpha
Helix 6	6	A	137	151	Right-handed alpha
Helix 7	7	A	182	186	Right-handed 310
Helix 8	8	A	187	198	Right-handed alpha
Helix 9	9	A	220	231	Right-handed alpha
Helix 10	10	A	236	246	Right-handed alpha
Helix 11	11	A	257	269	Right-handed alpha
Helix 12	12	A	277	287	Right-handed alpha
Helix 13	13	B	28	39	Right-handed alpha
Helix 14	14	B	42	50	Right-handed alpha
Helix 15	15	B	65	70	Right-handed alpha
Helix 16	16	B	76	98	Right-handed alpha
Helix 17	17	B	117	128	Right-handed alpha
Helix 18	18	B	137	151	Right-handed alpha
Helix 19	19	B	182	186	Right-handed 310
Helix 20	20	B	187	198	Right-handed alpha
Helix 21	21	B	214	217	Right-handed 310
Helix 22	22	B	220	231	Right-handed alpha
Helix 23	23	B	236	246	Right-handed alpha
Helix 24	24	B	257	269	Right-handed alpha
Helix 25	25	B	277	287	Right-handed alpha
Helix 26	26	C	28	40	Right-handed alpha
Helix 27	27	C	42	50	Right-handed alpha
Helix 28	28	C	65	70	Right-handed alpha
Helix 29	29	C	76	98	Right-handed alpha
Helix 30	30	C	117	128	Right-handed alpha
Helix 31	31	C	137	151	Right-handed alpha
Helix 32	32	C	182	186	Right-handed 310
Helix 33	33	C	187	198	Right-handed alpha
Helix 34	34	C	220	231	Right-handed alpha
Helix 35	35	C	236	246	Right-handed alpha
Helix 36	36	C	257	269	Right-handed alpha
Helix 37	37	C	277	287	Right-handed alpha
Helix 38	38	D	28	39	Right-handed alpha
Helix 39	39	D	42	53	Right-handed alpha
Helix 40	40	D	65	70	Right-handed alpha
Helix 41	41	D	78	98	Right-handed alpha
Helix 42	42	D	117	128	Right-handed alpha
Helix 43	43	D	137	151	Right-handed alpha
Helix 44	44	D	182	186	Right-handed 310
Helix 45	45	D	187	198	Right-handed alpha
Helix 46	46	D	220	231	Right-handed alpha
Helix 47	47	D	236	246	Right-handed alpha
Helix 48	48	D	257	269	Right-handed alpha
Helix 49	49	D	277	287	Right-handed alpha
Helix 50	50	E	28	38	Right-handed alpha
Helix 51	51	E	43	53	Right-handed alpha
Helix 52	52	E	65	70	Right-handed alpha
Helix 53	53	E	76	98	Right-handed alpha
Helix 54	54	E	117	128	Right-handed alpha
Helix 55	55	E	137	151	Right-handed alpha
Helix 56	56	E	182	186	Right-handed 310
Helix 57	57	E	187	198	Right-handed alpha
Helix 58	58	E	220	231	Right-handed alpha
Helix 59	59	E	236	246	Right-handed alpha
Helix 60	60	E	257	269	Right-handed alpha
Helix 61	61	E	277	287	Right-handed alpha
Helix 62	62	F	28	39	Right-handed alpha
Helix 63	63	F	43	53	Right-handed alpha
Helix 64	64	F	76	98	Right-handed alpha
Helix 65	65	F	117	128	Right-handed alpha
Helix 66	66	F	137	151	Right-handed alpha
Helix 67	67	F	182	186	Right-handed 310
Helix 68	68	F	187	198	Right-handed alpha
Helix 69	69	F	220	231	Right-handed alpha
Helix 70	70	F	236	246	Right-handed alpha
Helix 71	71	F	257	269	Right-handed alpha
Helix 72	72	F	277	287	Right-handed alpha
Helix 73	73	G	29	40	Right-handed alpha
Helix 74	74	G	42	53	Right-handed alpha
Helix 75	75	G	65	70	Right-handed alpha
Helix 76	76	G	78	98	Right-handed alpha
Helix 77	77	G	117	128	Right-handed alpha
Helix 78	78	G	137	151	Right-handed alpha
Helix 79	79	G	182	186	Right-handed 310
Helix 80	80	G	187	198	Right-handed alpha
Helix 81	81	G	220	231	Right-handed alpha
Helix 82	82	G	236	246	Right-handed alpha
Helix 83	83	G	257	269	Right-handed alpha
Helix 84	84	G	277	287	Right-handed alpha
Helix 85	85	H	28	39	Right-handed alpha
Helix 86	86	H	47	51	Right-handed alpha
Helix 87	87	H	65	70	Right-handed alpha
Helix 88	88	H	76	98	Right-handed alpha
Helix 89	89	H	117	128	Right-handed alpha
Helix 90	90	H	137	151	Right-handed alpha
Helix 91	91	H	182	186	Right-handed 310
Helix 92	92	H	187	198	Right-handed alpha
Helix 93	93	H	220	231	Right-handed alpha
Helix 94	94	H	236	246	Right-handed alpha
Helix 95	95	H	257	269	Right-handed alpha
Helix 96	96	H	277	287	Right-handed alpha
Helix 97	97	I	29	37	Right-handed alpha
Helix 98	98	I	42	47	Right-handed alpha
Helix 99	99	I	48	51	Right-handed 310
Helix 100	100	I	65	70	Right-handed alpha
Helix 101	101	I	76	98	Right-handed alpha
Helix 102	102	I	117	128	Right-handed alpha
Helix 103	103	I	137	151	Right-handed alpha
Helix 104	104	I	182	186	Right-handed 310
Helix 105	105	I	187	198	Right-handed alpha
Helix 106	106	I	214	217	Right-handed 310
Helix 107	107	I	220	231	Right-handed alpha
Helix 108	108	I	236	246	Right-handed alpha
Helix 109	109	I	257	269	Right-handed alpha
Helix 110	110	I	277	287	Right-handed alpha
Helix 111	111	J	28	40	Right-handed alpha
Helix 112	112	J	42	50	Right-handed alpha
Helix 113	113	J	65	70	Right-handed alpha
Helix 114	114	J	78	98	Right-handed alpha
Helix 115	115	J	117	128	Right-handed alpha
Helix 116	116	J	137	151	Right-handed alpha
Helix 117	117	J	182	186	Right-handed 310
Helix 118	118	J	187	198	Right-handed alpha
Helix 119	119	J	220	231	Right-handed alpha
Helix 120	120	J	236	246	Right-handed alpha
Helix 121	121	J	257	269	Right-handed alpha
Helix 122	122	J	277	287	Right-handed alpha
Helix 123	123	K	44	51	Right-handed alpha
Helix 124	124	K	76	98	Right-handed alpha
Helix 125	125	K	117	128	Right-handed alpha
Helix 126	126	K	137	151	Right-handed alpha
Helix 127	127	K	182	186	Right-handed 310
Helix 128	128	K	187	198	Right-handed alpha
Helix 129	129	K	220	231	Right-handed alpha
Helix 130	130	K	236	246	Right-handed alpha
Helix 131	131	K	257	269	Right-handed alpha
Helix 132	132	K	277	287	Right-handed alpha
Helix 133	133	L	27	38	Right-handed alpha
Helix 134	134	L	42	50	Right-handed alpha
Helix 135	135	L	78	98	Right-handed alpha
Helix 136	136	L	117	128	Right-handed alpha
Helix 137	137	L	137	151	Right-handed alpha
Helix 138	138	L	182	186	Right-handed 310
Helix 139	139	L	187	198	Right-handed alpha
Helix 140	140	L	220	231	Right-handed alpha
Helix 141	141	L	236	246	Right-handed alpha
Helix 142	142	L	257	269	Right-handed alpha
Helix 143	143	L	277	287	Right-handed alpha

There are 12 sheets in PDB entry 4F86. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	161	first strand
Strand 2	A	130	135	parallel
Strand 3	A	108	112	parallel
Strand 4	A	174	180	parallel
Strand 5	A	199	212	parallel
Strand 6	A	290	299	anti-parallel
Strand 7	A	249	256	anti-parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	161	first strand
Strand 2	B	130	135	parallel
Strand 3	B	108	112	parallel
Strand 4	B	174	180	parallel
Strand 5	B	199	212	parallel
Strand 6	B	290	299	anti-parallel
Strand 7	B	249	256	anti-parallel

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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	130	135	parallel
Strand 3	C	108	112	parallel
Strand 4	C	174	180	parallel
Strand 5	C	199	212	parallel
Strand 6	C	290	299	anti-parallel
Strand 7	C	249	256	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	161	first strand
Strand 2	D	130	135	parallel
Strand 3	D	108	112	parallel
Strand 4	D	174	180	parallel
Strand 5	D	199	212	parallel
Strand 6	D	290	299	anti-parallel
Strand 7	D	249	256	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	161	first strand
Strand 2	E	130	135	parallel
Strand 3	E	108	112	parallel
Strand 4	E	174	180	parallel
Strand 5	E	199	212	parallel
Strand 6	E	290	299	anti-parallel
Strand 7	E	249	256	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	161	first strand
Strand 2	F	130	135	parallel
Strand 3	F	108	112	parallel
Strand 4	F	174	180	parallel
Strand 5	F	199	212	parallel
Strand 6	F	290	299	anti-parallel
Strand 7	F	249	256	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	161	first strand
Strand 2	G	130	135	parallel
Strand 3	G	108	112	parallel
Strand 4	G	174	180	parallel
Strand 5	G	199	212	parallel
Strand 6	G	290	299	anti-parallel
Strand 7	G	249	256	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	161	first strand
Strand 2	H	130	135	parallel
Strand 3	H	108	112	parallel
Strand 4	H	174	180	parallel
Strand 5	H	199	212	parallel
Strand 6	H	290	299	anti-parallel
Strand 7	H	249	256	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	157	161	first strand
Strand 2	I	130	135	parallel
Strand 3	I	108	112	parallel
Strand 4	I	174	180	parallel
Strand 5	I	199	212	parallel
Strand 6	I	290	299	anti-parallel
Strand 7	I	249	256	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	161	first strand
Strand 2	J	130	135	parallel
Strand 3	J	108	112	parallel
Strand 4	J	174	180	parallel
Strand 5	J	199	212	parallel
Strand 6	J	290	299	anti-parallel
Strand 7	J	249	256	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	157	161	first strand
Strand 2	K	130	135	parallel
Strand 3	K	108	112	parallel
Strand 4	K	174	180	parallel
Strand 5	K	199	212	parallel
Strand 6	K	290	299	anti-parallel
Strand 7	K	249	256	anti-parallel

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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	157	161	first strand
Strand 2	L	130	135	parallel
Strand 3	L	108	112	parallel
Strand 4	L	174	180	parallel
Strand 5	L	199	212	parallel
Strand 6	L	290	299	anti-parallel
Strand 7	L	249	256	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4F86

Analysis of interatomic Contacts of Structural Units in PDB entry:
4F86