Analysis of interatomic Contacts of Structural Units in PDB entry:
4F88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4F88 entry

There are 12 chains in PDB entry 4F88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	SER 2	PHE 464
2	SER 2	ILE 462
A	ILE 3	LYS 70
B	SER 1	LYS 70
C	LYS 2	LYS 70
D	GLU 8	LYS 70
E	ASN 6	LYS 70
F	ASN 6	LYS 70
G	LYS 2	LYS 70
H	ILE 3	LYS 70
I	ILE 3	LYS 67
J	LYS 2	ALA 68

There are 69 helices in PDB entry 4F88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	1	6	15	Right-handed alpha
Helix 2	2	1	26	36	Right-handed alpha
Helix 3	3	1	39	45	Right-handed alpha
Helix 4	4	1	49	64	Right-handed alpha
Helix 5	5	1	67	78	Right-handed alpha
Helix 6	6	1	96	110	Right-handed alpha
Helix 7	7	1	135	143	Right-handed alpha
Helix 8	8	1	147	156	Right-handed alpha
Helix 9	9	1	156	164	Right-handed alpha
Helix 10	10	1	165	172	Right-handed alpha
Helix 11	11	1	183	194	Right-handed alpha
Helix 12	12	1	200	205	Right-handed alpha
Helix 13	13	1	228	243	Right-handed alpha
Helix 14	14	1	251	258	Right-handed alpha
Helix 15	15	1	271	288	Right-handed alpha
Helix 16	16	1	311	322	Right-handed alpha
Helix 17	17	1	332	345	Right-handed alpha
Helix 18	18	1	451	457	Right-handed alpha
Helix 19	19	2	6	15	Right-handed alpha
Helix 20	20	2	26	36	Right-handed alpha
Helix 21	21	2	39	45	Right-handed alpha
Helix 22	22	2	50	64	Right-handed alpha
Helix 23	23	2	67	78	Right-handed alpha
Helix 24	24	2	96	110	Right-handed alpha
Helix 25	25	2	131	143	Right-handed alpha
Helix 26	26	2	147	156	Right-handed alpha
Helix 27	27	2	156	165	Right-handed alpha
Helix 28	28	2	165	172	Right-handed alpha
Helix 29	29	2	183	195	Right-handed alpha
Helix 30	30	2	228	243	Right-handed alpha
Helix 31	31	2	251	258	Right-handed alpha
Helix 32	32	2	271	284	Right-handed alpha
Helix 33	33	2	310	320	Right-handed alpha
Helix 34	34	2	332	345	Right-handed alpha
Helix 35	35	2	350	354	Right-handed 310
Helix 36	36	2	450	457	Right-handed alpha
Helix 37	37	A	41	49	Right-handed alpha
Helix 38	38	A	61	70	Right-handed alpha
Helix 39	39	B	41	49	Right-handed alpha
Helix 40	40	B	61	70	Right-handed alpha
Helix 41	41	C	41	49	Right-handed alpha
Helix 42	42	C	61	70	Right-handed alpha
Helix 43	43	D	9	13	Right-handed 310
Helix 44	44	D	41	49	Right-handed alpha
Helix 45	45	D	61	70	Right-handed alpha
Helix 46	46	E	41	49	Right-handed alpha
Helix 47	47	E	61	70	Right-handed alpha
Helix 48	48	F	41	49	Right-handed alpha
Helix 49	49	F	61	70	Right-handed alpha
Helix 50	50	G	41	49	Right-handed alpha
Helix 51	51	G	61	70	Right-handed alpha
Helix 52	52	H	41	49	Right-handed alpha
Helix 53	53	H	61	70	Right-handed alpha
Helix 54	54	I	41	49	Right-handed alpha
Helix 55	55	I	61	67	Right-handed alpha
Helix 56	56	J	45	49	Right-handed alpha
Helix 57	57	J	61	68	Right-handed alpha
Helix 58	58	K	41	49	Right-handed alpha
Helix 59	59	K	61	66	Right-handed alpha
Helix 60	60	L	41	49	Right-handed alpha
Helix 61	61	L	61	69	Right-handed alpha
Helix 62	62	M	41	49	Right-handed alpha
Helix 63	63	M	61	70	Right-handed alpha
Helix 64	64	N	41	49	Right-handed alpha
Helix 65	65	N	61	70	Right-handed alpha
Helix 66	66	O	41	49	Right-handed alpha
Helix 67	67	O	61	70	Right-handed alpha
Helix 68	68	P	41	49	Right-handed alpha
Helix 69	69	P	61	70	Right-handed alpha

There are 17 sheets in PDB entry 4F88. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	445	450	first strand
Strand 2	1	431	436	anti-parallel
Strand 3	1	421	427	anti-parallel
Strand 4	1	402	405	anti-parallel
Strand 5	1	458	462	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	445	449	first strand
Strand 2	2	432	436	anti-parallel
Strand 3	2	421	427	anti-parallel
Strand 4	2	402	405	anti-parallel
Strand 5	2	458	462	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	B	4	7	parallel
Strand 3	A	5	8	parallel
Strand 4	H	5	8	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	29	32	anti-parallel
Strand 3	A	15	19	anti-parallel
Strand 4	A	54	56	parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	29	32	anti-parallel
Strand 3	B	15	19	anti-parallel
Strand 4	B	54	56	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	29	32	anti-parallel
Strand 3	C	15	19	anti-parallel
Strand 4	C	54	56	parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	39	first strand
Strand 2	D	28	32	anti-parallel
Strand 3	D	15	19	anti-parallel
Strand 4	D	54	56	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	29	32	anti-parallel
Strand 3	E	15	19	anti-parallel
Strand 4	E	54	56	parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	29	32	anti-parallel
Strand 3	F	15	19	anti-parallel
Strand 4	F	54	56	parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	38	first strand
Strand 2	G	29	32	anti-parallel
Strand 3	G	15	19	anti-parallel
Strand 4	G	54	56	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	38	first strand
Strand 2	H	29	32	anti-parallel
Strand 3	H	15	19	anti-parallel
Strand 4	H	54	56	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	18	first strand
Strand 2	I	54	55	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	5	first strand
Strand 2	K	4	5	parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	38	first strand
Strand 2	M	29	32	anti-parallel
Strand 3	M	15	19	anti-parallel
Strand 4	M	54	56	parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	35	38	first strand
Strand 2	N	29	32	anti-parallel
Strand 3	N	15	19	anti-parallel
Strand 4	N	54	56	parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	35	38	first strand
Strand 2	O	29	32	anti-parallel
Strand 3	O	15	19	anti-parallel
Strand 4	O	54	56	parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	35	38	first strand
Strand 2	P	29	32	anti-parallel
Strand 3	P	15	19	anti-parallel
Strand 4	P	54	56	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4F88

Analysis of interatomic Contacts of Structural Units in PDB entry:
4F88