Analysis of interatomic Contacts of Structural Units in PDB entry:
4F8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F8B entry

There are 5 chains in PDB entry 4F8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 20PRO 158
B
 ASN 20ARG 164
C
 ASN 20ARG 164
D
 ASN 20ARG 164
E
 ASN 20ARG 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4F8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 30Right-handed 310
Helix 2
2
A
78 88Right-handed alpha
Helix 3
3
A
95 112Right-handed alpha
Helix 4
4
A
141 157Right-handed alpha
Helix 5
5
B
26 30Right-handed 310
Helix 6
6
B
78 88Right-handed alpha
Helix 7
7
B
95 112Right-handed alpha
Helix 8
8
B
141 153Right-handed alpha
Helix 9
9
C
26 30Right-handed 310
Helix 10
10
C
78 88Right-handed alpha
Helix 11
11
C
95 112Right-handed alpha
Helix 12
12
C
141 153Right-handed alpha
Helix 13
13
D
26 30Right-handed 310
Helix 14
14
D
78 88Right-handed alpha
Helix 15
15
D
95 112Right-handed alpha
Helix 16
16
D
141 153Right-handed alpha
Helix 17
17
E
26 30Right-handed 310
Helix 18
18
E
78 88Right-handed alpha
Helix 19
19
E
95 112Right-handed alpha
Helix 20
20
E
141 153Right-handed alpha
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There are 6 sheets in PDB entry 4F8B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
75 77anti-parallel
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There are 21 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
E
43 54anti-parallel
Strand 3
E
61 71anti-parallel
Strand 4
E
115 122anti-parallel
Strand 5
E
129 137anti-parallel
Strand 6
D
43 54anti-parallel
Strand 7
D
61 71anti-parallel
Strand 8
D
115 122anti-parallel
Strand 9
D
129 137anti-parallel
Strand 10
C
42 54anti-parallel
Strand 11
C
61 71anti-parallel
Strand 12
C
115 122anti-parallel
Strand 13
C
129 137anti-parallel
Strand 14
B
42 54anti-parallel
Strand 15
B
61 71anti-parallel
Strand 16
B
115 122anti-parallel
Strand 17
B
129 137anti-parallel
Strand 18
A
43 54anti-parallel
Strand 19
A
61 71anti-parallel
Strand 20
A
115 122anti-parallel
Strand 21
A
133 137anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
75 77anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 34first strand
Strand 2
C
75 77anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 34first strand
Strand 2
D
75 77anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
32 34first strand
Strand 2
E
75 77anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il