Analysis of interatomic Contacts of Structural Units in PDB entry:
4F8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F8C entry

There are 4 chains in PDB entry 4F8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 40HIS 288
B
 MET 1ARG 74
C
 ASN 40THR 287
D
 MET 1LEU 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 4F8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 54Right-handed alpha
Helix 2
2
A
56 64Right-handed alpha
Helix 3
3
A
71 75Right-handed 310
Helix 4
4
A
76 96Right-handed alpha
Helix 5
5
A
98 107Right-handed alpha
Helix 6
6
A
116 130Right-handed alpha
Helix 7
7
A
145 155Right-handed alpha
Helix 8
8
A
205 213Right-handed alpha
Helix 9
9
A
220 230Right-handed alpha
Helix 10
10
A
236 245Right-handed alpha
Helix 11
11
A
249 253Right-handed 310
Helix 12
12
A
254 258Right-handed 310
Helix 13
13
A
259 263Right-handed 310
Helix 14
14
A
274 286Right-handed alpha
Helix 15
15
B
22 35Right-handed alpha
Helix 16
16
B
37 41Right-handed 310
Helix 17
17
B
55 60Right-handed alpha
Helix 18
18
C
41 54Right-handed alpha
Helix 19
19
C
56 64Right-handed alpha
Helix 20
20
C
71 75Right-handed 310
Helix 21
21
C
76 96Right-handed alpha
Helix 22
22
C
98 107Right-handed alpha
Helix 23
23
C
116 130Right-handed alpha
Helix 24
24
C
137 141Right-handed 310
Helix 25
25
C
145 154Right-handed alpha
Helix 26
26
C
205 213Right-handed alpha
Helix 27
27
C
219 232Right-handed alpha
Helix 28
28
C
236 245Right-handed alpha
Helix 29
29
C
249 253Right-handed 310
Helix 30
30
C
254 258Right-handed 310
Helix 31
31
C
259 263Right-handed 310
Helix 32
32
C
274 286Right-handed alpha
Helix 33
33
D
22 35Right-handed alpha
Helix 34
34
D
37 41Right-handed 310
Helix 35
35
D
56 60Right-handed 310
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There are 4 sheets in PDB entry 4F8C. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
188 192anti-parallel
Strand 3
A
173 179anti-parallel
Strand 4
A
161 168anti-parallel
Strand 5
A
266 273anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
66 70parallel
Strand 4
B
42 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 192first strand
Strand 2
C
173 179anti-parallel
Strand 3
C
161 168anti-parallel
Strand 4
C
266 273anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
66 70parallel
Strand 4
D
42 45anti-parallel
Strand 5
D
48 49anti-parallel
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