Analysis of interatomic Contacts of Structural Units in PDB entry:
4F8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F8H entry

There are 5 chains in PDB entry 4F8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5PHE 315
B
 VAL 5PHE 315
C
 VAL 5PHE 315
D
 VAL 5PHE 315
E
 VAL 5PHE 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 4F8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 53Right-handed 310
Helix 2
2
A
55 60Right-handed alpha
Helix 3
3
A
146 149Right-handed 310
Helix 4
4
A
196 201Right-handed alpha
Helix 5
5
A
201 214Right-handed alpha
Helix 6
6
A
215 218Right-handed 310
Helix 7
7
A
220 244Right-handed alpha
Helix 8
8
A
253 282Right-handed alpha
Helix 9
9
A
284 315Right-handed alpha
Helix 10
10
B
50 53Right-handed 310
Helix 11
11
B
55 60Right-handed alpha
Helix 12
12
B
146 149Right-handed 310
Helix 13
13
B
196 201Right-handed alpha
Helix 14
14
B
201 214Right-handed alpha
Helix 15
15
B
215 218Right-handed 310
Helix 16
16
B
220 244Right-handed alpha
Helix 17
17
B
253 282Right-handed alpha
Helix 18
18
B
284 315Right-handed alpha
Helix 19
19
C
50 53Right-handed 310
Helix 20
20
C
55 60Right-handed alpha
Helix 21
21
C
146 149Right-handed 310
Helix 22
22
C
196 201Right-handed alpha
Helix 23
23
C
201 214Right-handed alpha
Helix 24
24
C
215 218Right-handed 310
Helix 25
25
C
220 244Right-handed alpha
Helix 26
26
C
253 282Right-handed alpha
Helix 27
27
C
284 315Right-handed alpha
Helix 28
28
D
50 53Right-handed 310
Helix 29
29
D
55 60Right-handed alpha
Helix 30
30
D
146 149Right-handed 310
Helix 31
31
D
196 201Right-handed alpha
Helix 32
32
D
201 214Right-handed alpha
Helix 33
33
D
215 218Right-handed 310
Helix 34
34
D
220 244Right-handed alpha
Helix 35
35
D
253 282Right-handed alpha
Helix 36
36
D
284 315Right-handed alpha
Helix 37
37
E
50 53Right-handed 310
Helix 38
38
E
55 60Right-handed alpha
Helix 39
39
E
146 149Right-handed 310
Helix 40
40
E
196 201Right-handed alpha
Helix 41
41
E
201 214Right-handed alpha
Helix 42
42
E
215 218Right-handed 310
Helix 43
43
E
220 244Right-handed alpha
Helix 44
44
E
253 282Right-handed alpha
Helix 45
45
E
284 315Right-handed alpha
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There are 15 sheets in PDB entry 4F8H. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
86 95anti-parallel
Strand 3
A
99 110anti-parallel
Strand 4
A
36 48anti-parallel
Strand 5
A
16 31anti-parallel
Strand 6
A
140 144parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
86 95anti-parallel
Strand 3
A
99 110anti-parallel
Strand 4
A
36 48anti-parallel
Strand 5
A
16 31anti-parallel
Strand 6
A
150 151parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
123 133anti-parallel
Strand 3
A
179 192anti-parallel
Strand 4
A
160 176anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
86 95anti-parallel
Strand 3
B
99 110anti-parallel
Strand 4
B
36 48anti-parallel
Strand 5
B
16 31anti-parallel
Strand 6
B
140 144parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
86 95anti-parallel
Strand 3
B
99 110anti-parallel
Strand 4
B
36 48anti-parallel
Strand 5
B
16 31anti-parallel
Strand 6
B
150 151parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
123 133anti-parallel
Strand 3
B
179 192anti-parallel
Strand 4
B
160 176anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 65first strand
Strand 2
C
86 95anti-parallel
Strand 3
C
99 110anti-parallel
Strand 4
C
36 48anti-parallel
Strand 5
C
16 31anti-parallel
Strand 6
C
140 144parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 65first strand
Strand 2
C
86 95anti-parallel
Strand 3
C
99 110anti-parallel
Strand 4
C
36 48anti-parallel
Strand 5
C
16 31anti-parallel
Strand 6
C
150 151parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 78first strand
Strand 2
C
123 133anti-parallel
Strand 3
C
179 192anti-parallel
Strand 4
C
160 176anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 65first strand
Strand 2
D
86 95anti-parallel
Strand 3
D
99 110anti-parallel
Strand 4
D
36 48anti-parallel
Strand 5
D
16 31anti-parallel
Strand 6
D
140 144parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 65first strand
Strand 2
D
86 95anti-parallel
Strand 3
D
99 110anti-parallel
Strand 4
D
36 48anti-parallel
Strand 5
D
16 31anti-parallel
Strand 6
D
150 151parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 78first strand
Strand 2
D
123 133anti-parallel
Strand 3
D
179 192anti-parallel
Strand 4
D
160 176anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
64 65first strand
Strand 2
E
86 95anti-parallel
Strand 3
E
99 110anti-parallel
Strand 4
E
36 48anti-parallel
Strand 5
E
16 31anti-parallel
Strand 6
E
140 144parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
64 65first strand
Strand 2
E
86 95anti-parallel
Strand 3
E
99 110anti-parallel
Strand 4
E
36 48anti-parallel
Strand 5
E
16 31anti-parallel
Strand 6
E
150 151parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
76 78first strand
Strand 2
E
123 133anti-parallel
Strand 3
E
179 192anti-parallel
Strand 4
E
160 176anti-parallel
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