Analysis of interatomic Contacts of Structural Units in PDB entry:
4F8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F8Y entry

There are 4 chains in PDB entry 4F8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 196
B
 MET 1ILE 188
C
 MET 1HIS 196
D
 MET 1ILE 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 4F8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
54 61Right-handed 310
Helix 3
3
A
64 74Right-handed alpha
Helix 4
4
A
89 100Right-handed alpha
Helix 5
5
A
131 135Right-handed 310
Helix 6
6
A
142 149Right-handed alpha
Helix 7
7
A
170 187Right-handed alpha
Helix 8
8
B
14 27Right-handed alpha
Helix 9
9
B
54 63Right-handed 310
Helix 10
10
B
64 74Right-handed alpha
Helix 11
11
B
89 100Right-handed alpha
Helix 12
12
B
134 138Right-handed 310
Helix 13
13
B
142 149Right-handed alpha
Helix 14
14
B
150 154Right-handed 310
Helix 15
15
B
170 187Right-handed alpha
Helix 16
16
C
14 27Right-handed alpha
Helix 17
17
C
54 63Right-handed 310
Helix 18
18
C
64 74Right-handed alpha
Helix 19
19
C
89 100Right-handed alpha
Helix 20
20
C
134 138Right-handed 310
Helix 21
21
C
142 148Right-handed alpha
Helix 22
22
C
150 154Right-handed 310
Helix 23
23
C
170 187Right-handed alpha
Helix 24
24
D
14 27Right-handed alpha
Helix 25
25
D
54 63Right-handed 310
Helix 26
26
D
64 74Right-handed alpha
Helix 27
27
D
89 100Right-handed alpha
Helix 28
28
D
134 138Right-handed 310
Helix 29
29
D
142 148Right-handed alpha
Helix 30
30
D
150 154Right-handed 310
Helix 31
31
D
170 188Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4F8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
2 7parallel
Strand 3
A
76 82parallel
Strand 4
A
120 127parallel
Strand 5
A
155 163parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
113 115anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 37first strand
Strand 2
B
2 7parallel
Strand 3
B
76 82parallel
Strand 4
B
121 127parallel
Strand 5
B
158 163parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
113 115anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 37first strand
Strand 2
C
2 7parallel
Strand 3
C
76 82parallel
Strand 4
C
121 127parallel
Strand 5
C
158 163parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 108first strand
Strand 2
C
113 115anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 37first strand
Strand 2
D
2 7parallel
Strand 3
D
76 82parallel
Strand 4
D
121 127parallel
Strand 5
D
158 163parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
106 108first strand
Strand 2
D
113 115anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il