Analysis of interatomic Contacts of Structural Units in PDB entry:
4F9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F9D entry

There are 2 chains in PDB entry 4F9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 43PRO 646
B
 PRO 43PRO 646
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 4F9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 84Right-handed alpha
Helix 2
2
A
90 99Right-handed alpha
Helix 3
3
A
117 123Right-handed alpha
Helix 4
4
A
123 132Right-handed alpha
Helix 5
5
A
140 145Right-handed alpha
Helix 6
6
A
160 164Right-handed 310
Helix 7
7
A
166 177Right-handed alpha
Helix 8
8
A
204 206Right-handed 310
Helix 9
9
A
218 242Right-handed alpha
Helix 10
10
A
251 254Right-handed 310
Helix 11
11
A
256 266Right-handed alpha
Helix 12
12
A
297 307Right-handed alpha
Helix 13
13
A
320 325Right-handed alpha
Helix 14
14
A
328 346Right-handed alpha
Helix 15
15
A
381 394Right-handed alpha
Helix 16
16
A
418 420Right-handed 310
Helix 17
17
A
421 427Right-handed alpha
Helix 18
18
A
428 434Right-handed 310
Helix 19
19
A
439 457Right-handed alpha
Helix 20
20
A
477 487Right-handed alpha
Helix 21
21
A
492 498Right-handed alpha
Helix 22
22
A
499 530Right-handed alpha
Helix 23
23
A
541 546Right-handed alpha
Helix 24
24
A
547 553Right-handed 310
Helix 25
25
A
556 564Right-handed alpha
Helix 26
26
A
572 576Right-handed 310
Helix 27
27
A
579 596Right-handed alpha
Helix 28
28
A
599 603Right-handed alpha
Helix 29
29
A
622 636Right-handed alpha
Helix 30
30
B
71 84Right-handed alpha
Helix 31
31
B
90 99Right-handed alpha
Helix 32
32
B
117 123Right-handed alpha
Helix 33
33
B
123 132Right-handed alpha
Helix 34
34
B
140 145Right-handed alpha
Helix 35
35
B
160 164Right-handed 310
Helix 36
36
B
166 176Right-handed alpha
Helix 37
37
B
204 206Right-handed 310
Helix 38
38
B
218 241Right-handed alpha
Helix 39
39
B
251 254Right-handed 310
Helix 40
40
B
256 266Right-handed alpha
Helix 41
41
B
297 307Right-handed alpha
Helix 42
42
B
320 325Right-handed alpha
Helix 43
43
B
328 346Right-handed alpha
Helix 44
44
B
381 393Right-handed alpha
Helix 45
45
B
418 420Right-handed 310
Helix 46
46
B
421 427Right-handed alpha
Helix 47
47
B
428 434Right-handed 310
Helix 48
48
B
439 457Right-handed alpha
Helix 49
49
B
477 487Right-handed alpha
Helix 50
50
B
492 498Right-handed alpha
Helix 51
51
B
499 530Right-handed alpha
Helix 52
52
B
541 546Right-handed alpha
Helix 53
53
B
547 553Right-handed 310
Helix 54
54
B
556 564Right-handed alpha
Helix 55
55
B
572 576Right-handed 310
Helix 56
56
B
579 596Right-handed alpha
Helix 57
57
B
599 603Right-handed alpha
Helix 58
58
B
622 636Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 4F9D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
108 115parallel
Strand 3
A
48 54parallel
Strand 4
A
279 280anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
135 139parallel
Strand 3
A
108 115parallel
Strand 4
A
48 54parallel
Strand 5
A
290 291parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
68 70parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
157 159anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
200 202anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
215 216anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
270 272parallel
Back to list of sheets
Back to top of page

There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 319first strand
Strand 2
A
350 354parallel
Strand 3
A
396 401parallel
Strand 4
A
461 464parallel
Strand 5
A
534 540parallel
Strand 6
A
566 570parallel
Strand 7
A
604 608parallel
Strand 8
A
641 644parallel
Strand 9
A
315 319parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
367 368anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
108 115parallel
Strand 3
B
48 54parallel
Strand 4
B
279 280anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
135 139parallel
Strand 3
B
108 115parallel
Strand 4
B
48 54parallel
Strand 5
B
290 291parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
68 70parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
157 159anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
200 202anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
215 216anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
270 272parallel
Back to list of sheets
Back to top of page

There are 9 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 319first strand
Strand 2
B
350 354parallel
Strand 3
B
396 401parallel
Strand 4
B
461 464parallel
Strand 5
B
534 540parallel
Strand 6
B
566 570parallel
Strand 7
B
604 608parallel
Strand 8
B
641 644parallel
Strand 9
B
315 319parallel
Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 357first strand
Strand 2
B
367 368anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il