Analysis of interatomic Contacts of Structural Units in PDB entry:
4F9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4F9J entry

There are 2 chains in PDB entry 4F9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 43PHE 649
B
 PRO 43PHE 649
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 4F9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
71 84Right-handed alpha
Helix 2
2
A
90 99Right-handed alpha
Helix 3
3
A
117 123Right-handed alpha
Helix 4
4
A
123 132Right-handed alpha
Helix 5
5
A
140 145Right-handed alpha
Helix 6
6
A
160 164Right-handed 310
Helix 7
7
A
166 176Right-handed alpha
Helix 8
8
A
204 206Right-handed 310
Helix 9
9
A
218 241Right-handed alpha
Helix 10
10
A
251 254Right-handed 310
Helix 11
11
A
256 266Right-handed alpha
Helix 12
12
A
297 307Right-handed alpha
Helix 13
13
A
320 325Right-handed alpha
Helix 14
14
A
328 346Right-handed alpha
Helix 15
15
A
381 394Right-handed alpha
Helix 16
16
A
418 420Right-handed 310
Helix 17
17
A
421 427Right-handed alpha
Helix 18
18
A
428 434Right-handed 310
Helix 19
19
A
439 457Right-handed alpha
Helix 20
20
A
477 487Right-handed alpha
Helix 21
21
A
492 499Right-handed alpha
Helix 22
22
A
499 530Right-handed alpha
Helix 23
23
A
541 546Right-handed alpha
Helix 24
24
A
549 554Right-handed alpha
Helix 25
25
A
556 564Right-handed alpha
Helix 26
26
A
572 576Right-handed 310
Helix 27
27
A
579 582Right-handed 310
Helix 28
28
A
583 597Right-handed alpha
Helix 29
29
A
599 603Right-handed alpha
Helix 30
30
A
618 637Right-handed alpha
Helix 31
31
B
71 84Right-handed alpha
Helix 32
32
B
90 99Right-handed alpha
Helix 33
33
B
117 123Right-handed alpha
Helix 34
34
B
123 132Right-handed alpha
Helix 35
35
B
140 145Right-handed alpha
Helix 36
36
B
160 164Right-handed 310
Helix 37
37
B
166 176Right-handed alpha
Helix 38
38
B
218 241Right-handed alpha
Helix 39
39
B
251 254Right-handed 310
Helix 40
40
B
256 265Right-handed alpha
Helix 41
41
B
297 307Right-handed alpha
Helix 42
42
B
308 310Right-handed 310
Helix 43
43
B
320 325Right-handed alpha
Helix 44
44
B
328 346Right-handed alpha
Helix 45
45
B
381 394Right-handed alpha
Helix 46
46
B
418 420Right-handed 310
Helix 47
47
B
421 428Right-handed alpha
Helix 48
48
B
429 434Right-handed 310
Helix 49
49
B
439 457Right-handed alpha
Helix 50
50
B
477 487Right-handed alpha
Helix 51
51
B
492 499Right-handed alpha
Helix 52
52
B
499 530Right-handed alpha
Helix 53
53
B
541 546Right-handed alpha
Helix 54
54
B
549 554Right-handed alpha
Helix 55
55
B
556 564Right-handed alpha
Helix 56
56
B
572 576Right-handed 310
Helix 57
57
B
579 597Right-handed alpha
Helix 58
58
B
599 603Right-handed alpha
Helix 59
59
B
618 637Right-handed alpha
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There are 18 sheets in PDB entry 4F9J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
108 115parallel
Strand 3
A
48 54parallel
Strand 4
A
279 280anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
135 139parallel
Strand 3
A
108 115parallel
Strand 4
A
48 54parallel
Strand 5
A
290 291parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
68 70parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
157 159anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
200 202anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
215 216anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
270 272parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 319first strand
Strand 2
A
350 354parallel
Strand 3
A
396 401parallel
Strand 4
A
461 464parallel
Strand 5
A
534 540parallel
Strand 6
A
566 570parallel
Strand 7
A
604 609parallel
Strand 8
A
642 645parallel
Strand 9
A
315 319parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
367 368anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
108 115parallel
Strand 3
B
48 54parallel
Strand 4
B
279 280anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
135 139parallel
Strand 3
B
108 115parallel
Strand 4
B
48 54parallel
Strand 5
B
290 291parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
68 70parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
157 159anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
200 202anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
215 216anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 249first strand
Strand 2
B
270 272parallel
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There are 9 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 319first strand
Strand 2
B
350 354parallel
Strand 3
B
396 401parallel
Strand 4
B
461 464parallel
Strand 5
B
534 540parallel
Strand 6
B
566 570parallel
Strand 7
B
604 609parallel
Strand 8
B
641 645parallel
Strand 9
B
315 319parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 357first strand
Strand 2
B
367 368anti-parallel
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