Analysis of interatomic Contacts of Structural Units in PDB entry:
4FBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FBW entry

There are 4 chains in PDB entry 4FBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 14LYS 412
B
 ASN 14LYS 412
C
 ASN 484LYS 526
D
 GLU 482ARG 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4FBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 55Right-handed alpha
Helix 2
2
A
73 89Right-handed alpha
Helix 3
3
A
114 118Right-handed 310
Helix 4
4
A
132 136Right-handed 310
Helix 5
5
A
144 152Right-handed alpha
Helix 6
6
A
190 200Right-handed alpha
Helix 7
7
A
235 239Right-handed 310
Helix 8
8
A
280 285Right-handed alpha
Helix 9
9
A
320 322Right-handed 310
Helix 10
10
A
331 359Right-handed alpha
Helix 11
11
A
388 395Right-handed alpha
Helix 12
12
B
39 55Right-handed alpha
Helix 13
13
B
73 89Right-handed alpha
Helix 14
14
B
114 118Right-handed 310
Helix 15
15
B
144 152Right-handed alpha
Helix 16
16
B
190 200Right-handed alpha
Helix 17
17
B
235 239Right-handed 310
Helix 18
18
B
280 285Right-handed alpha
Helix 19
19
B
320 322Right-handed 310
Helix 20
20
B
331 359Right-handed alpha
Helix 21
21
B
388 395Right-handed alpha
Helix 22
22
D
483 487Right-handed alpha
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There are 8 sheets in PDB entry 4FBW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
127 129parallel
Strand 3
A
59 62parallel
Strand 4
A
18 23parallel
Strand 5
A
288 295anti-parallel
Strand 6
A
298 305anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
172 176anti-parallel
Strand 3
A
179 186anti-parallel
Strand 4
A
216 222parallel
Strand 5
A
245 249parallel
Strand 6
A
266 270parallel
Strand 7
A
255 261anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
203 208parallel
Strand 3
C
492 496parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 318first strand
Strand 2
A
373 379parallel
Strand 3
A
407 410parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
127 129parallel
Strand 3
B
59 62parallel
Strand 4
B
18 23parallel
Strand 5
B
288 295anti-parallel
Strand 6
B
298 305anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
172 176anti-parallel
Strand 3
B
179 186anti-parallel
Strand 4
B
216 222parallel
Strand 5
B
245 249parallel
Strand 6
B
266 270parallel
Strand 7
B
255 261anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 169first strand
Strand 2
B
203 208parallel
Strand 3
D
492 496parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 318first strand
Strand 2
B
373 379parallel
Strand 3
B
407 410parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il