Analysis of interatomic Contacts of Structural Units in PDB entry:
4FDG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4FDG entry

There are 5 chains in PDB entry 4FDG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 7	GLU 598
A	GLN 7	GLU 598
C	GLN 7	GLU 598
D	GLN 7	GLU 598
E	GLN 7	GLU 598

There are102 helices in PDB entry 4FDG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	10	19	Right-handed alpha
Helix 2	2	B	31	41	Right-handed alpha
Helix 3	3	B	49	54	Right-handed alpha
Helix 4	4	B	56	84	Right-handed alpha
Helix 5	5	B	86	90	Right-handed 310
Helix 6	6	B	113	117	Right-handed 310
Helix 7	7	B	218	222	Right-handed 310
Helix 8	8	B	276	284	Right-handed alpha
Helix 9	9	B	289	300	Right-handed alpha
Helix 10	10	B	306	317	Right-handed alpha
Helix 11	11	B	345	354	Right-handed alpha
Helix 12	12	B	405	409	Right-handed 310
Helix 13	13	B	412	415	Right-handed 310
Helix 14	14	B	416	421	Right-handed alpha
Helix 15	15	B	469	474	Right-handed 310
Helix 16	16	B	488	498	Right-handed alpha
Helix 17	17	B	511	519	Right-handed alpha
Helix 18	18	B	530	549	Right-handed alpha
Helix 19	19	B	561	574	Right-handed alpha
Helix 20	20	B	584	598	Right-handed alpha
Helix 21	21	A	10	19	Right-handed alpha
Helix 22	22	A	31	41	Right-handed alpha
Helix 23	23	A	49	54	Right-handed alpha
Helix 24	24	A	56	84	Right-handed alpha
Helix 25	25	A	86	90	Right-handed 310
Helix 26	26	A	113	117	Right-handed 310
Helix 27	27	A	218	222	Right-handed 310
Helix 28	28	A	276	284	Right-handed alpha
Helix 29	29	A	289	300	Right-handed alpha
Helix 30	30	A	306	317	Right-handed alpha
Helix 31	31	A	345	354	Right-handed alpha
Helix 32	32	A	405	409	Right-handed 310
Helix 33	33	A	412	415	Right-handed 310
Helix 34	34	A	416	421	Right-handed alpha
Helix 35	35	A	469	474	Right-handed 310
Helix 36	36	A	488	498	Right-handed alpha
Helix 37	37	A	511	519	Right-handed alpha
Helix 38	38	A	530	549	Right-handed alpha
Helix 39	39	A	561	574	Right-handed alpha
Helix 40	40	A	584	598	Right-handed alpha
Helix 41	41	C	10	19	Right-handed alpha
Helix 42	42	C	31	41	Right-handed alpha
Helix 43	43	C	49	54	Right-handed alpha
Helix 44	44	C	56	84	Right-handed alpha
Helix 45	45	C	86	90	Right-handed 310
Helix 46	46	C	113	117	Right-handed 310
Helix 47	47	C	218	222	Right-handed 310
Helix 48	48	C	276	284	Right-handed alpha
Helix 49	49	C	289	300	Right-handed alpha
Helix 50	50	C	306	317	Right-handed alpha
Helix 51	51	C	345	354	Right-handed alpha
Helix 52	52	C	405	409	Right-handed 310
Helix 53	53	C	412	415	Right-handed 310
Helix 54	54	C	416	421	Right-handed alpha
Helix 55	55	C	469	474	Right-handed 310
Helix 56	56	C	488	498	Right-handed alpha
Helix 57	57	C	511	518	Right-handed alpha
Helix 58	58	C	530	549	Right-handed alpha
Helix 59	59	C	554	558	Right-handed 310
Helix 60	60	C	561	574	Right-handed alpha
Helix 61	61	C	584	598	Right-handed alpha
Helix 62	62	D	10	19	Right-handed alpha
Helix 63	63	D	31	41	Right-handed alpha
Helix 64	64	D	49	54	Right-handed alpha
Helix 65	65	D	56	84	Right-handed alpha
Helix 66	66	D	86	90	Right-handed 310
Helix 67	67	D	113	117	Right-handed 310
Helix 68	68	D	218	222	Right-handed 310
Helix 69	69	D	276	284	Right-handed alpha
Helix 70	70	D	289	300	Right-handed alpha
Helix 71	71	D	306	317	Right-handed alpha
Helix 72	72	D	345	354	Right-handed alpha
Helix 73	73	D	405	409	Right-handed 310
Helix 74	74	D	412	415	Right-handed 310
Helix 75	75	D	416	421	Right-handed alpha
Helix 76	76	D	469	474	Right-handed 310
Helix 77	77	D	488	498	Right-handed alpha
Helix 78	78	D	511	519	Right-handed alpha
Helix 79	79	D	530	549	Right-handed alpha
Helix 80	80	D	554	558	Right-handed 310
Helix 81	81	D	561	574	Right-handed alpha
Helix 82	82	D	584	598	Right-handed alpha
Helix 83	83	E	10	19	Right-handed alpha
Helix 84	84	E	31	41	Right-handed alpha
Helix 85	85	E	49	54	Right-handed alpha
Helix 86	86	E	56	84	Right-handed alpha
Helix 87	87	E	86	90	Right-handed 310
Helix 88	88	E	113	117	Right-handed 310
Helix 89	89	E	218	222	Right-handed 310
Helix 90	90	E	276	284	Right-handed alpha
Helix 91	91	E	289	300	Right-handed alpha
Helix 92	92	E	306	317	Right-handed alpha
Helix 93	93	E	345	354	Right-handed alpha
Helix 94	94	E	405	409	Right-handed 310
Helix 95	95	E	412	415	Right-handed 310
Helix 96	96	E	416	421	Right-handed alpha
Helix 97	97	E	469	474	Right-handed 310
Helix 98	98	E	488	498	Right-handed alpha
Helix 99	99	E	511	519	Right-handed alpha
Helix 100	100	E	530	549	Right-handed alpha
Helix 101	101	E	561	574	Right-handed alpha
Helix 102	102	E	584	598	Right-handed alpha

There are 30 sheets in PDB entry 4FDG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	98	101	parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	377	first strand
Strand 2	B	387	389	anti-parallel
Strand 3	B	120	130	anti-parallel
Strand 4	B	230	239	anti-parallel
Strand 5	B	255	263	anti-parallel
Strand 6	B	212	216	parallel
Strand 7	B	194	198	anti-parallel
Strand 8	B	120	130	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	139	first strand
Strand 2	B	188	192	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	154	first strand
Strand 2	B	141	145	anti-parallel
Strand 3	B	179	182	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	364	first strand
Strand 2	B	400	404	parallel
Strand 3	B	442	447	parallel
Strand 4	B	336	339	parallel
Strand 5	B	476	479	parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	429	first strand
Strand 2	B	434	438	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	98	101	parallel

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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	387	389	anti-parallel
Strand 3	A	120	130	anti-parallel
Strand 4	A	230	239	anti-parallel
Strand 5	A	255	263	anti-parallel
Strand 6	A	212	216	parallel
Strand 7	A	194	198	anti-parallel
Strand 8	A	120	130	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	139	first strand
Strand 2	A	188	192	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	154	first strand
Strand 2	A	141	145	anti-parallel
Strand 3	A	179	182	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	364	first strand
Strand 2	A	400	404	parallel
Strand 3	A	442	447	parallel
Strand 4	A	336	339	parallel
Strand 5	A	476	479	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	429	first strand
Strand 2	A	434	438	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	48	first strand
Strand 2	C	98	101	parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	377	first strand
Strand 2	C	387	389	anti-parallel
Strand 3	C	120	130	anti-parallel
Strand 4	C	230	239	anti-parallel
Strand 5	C	255	263	anti-parallel
Strand 6	C	212	216	parallel
Strand 7	C	194	198	anti-parallel
Strand 8	C	120	130	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	139	first strand
Strand 2	C	188	192	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	154	first strand
Strand 2	C	141	145	anti-parallel
Strand 3	C	179	182	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	364	first strand
Strand 2	C	400	404	parallel
Strand 3	C	442	447	parallel
Strand 4	C	336	339	parallel
Strand 5	C	476	479	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	429	first strand
Strand 2	C	434	438	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	98	101	parallel

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There are 8 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	377	first strand
Strand 2	D	387	389	anti-parallel
Strand 3	D	120	130	anti-parallel
Strand 4	D	230	239	anti-parallel
Strand 5	D	255	263	anti-parallel
Strand 6	D	212	216	parallel
Strand 7	D	194	198	anti-parallel
Strand 8	D	120	130	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	139	first strand
Strand 2	D	188	192	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	154	first strand
Strand 2	D	141	145	anti-parallel
Strand 3	D	179	182	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	364	first strand
Strand 2	D	400	404	parallel
Strand 3	D	442	447	parallel
Strand 4	D	336	339	parallel
Strand 5	D	476	479	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	429	first strand
Strand 2	D	434	438	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	48	first strand
Strand 2	E	98	101	parallel

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There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	375	377	first strand
Strand 2	E	387	389	anti-parallel
Strand 3	E	120	130	anti-parallel
Strand 4	E	230	239	anti-parallel
Strand 5	E	255	263	anti-parallel
Strand 6	E	212	216	parallel
Strand 7	E	194	198	anti-parallel
Strand 8	E	120	130	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	139	first strand
Strand 2	E	188	192	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	154	first strand
Strand 2	E	141	145	anti-parallel
Strand 3	E	179	182	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	360	364	first strand
Strand 2	E	400	404	parallel
Strand 3	E	442	447	parallel
Strand 4	E	336	339	parallel
Strand 5	E	476	479	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	425	429	first strand
Strand 2	E	434	438	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4FDG

Analysis of interatomic Contacts of Structural Units in PDB entry:
4FDG