Analysis of interatomic Contacts of Structural Units in PDB entry:
4FFE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FFE entry

There are 3 chains in PDB entry 4FFE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 GLY 0ARG 149
Y
 GLY 0ARG 149
Z
 GLY 0ARG 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 4FFE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
41 45Right-handed 310
Helix 2
2
X
49 64Right-handed alpha
Helix 3
3
X
111 126Right-handed alpha
Helix 4
4
X
129 147Right-handed alpha
Helix 5
5
Y
41 45Right-handed 310
Helix 6
6
Y
49 64Right-handed alpha
Helix 7
7
Y
111 126Right-handed alpha
Helix 8
8
Y
129 147Right-handed alpha
Helix 9
9
Z
41 45Right-handed 310
Helix 10
10
Z
49 64Right-handed alpha
Helix 11
11
Z
111 125Right-handed alpha
Helix 12
12
Z
129 148Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4FFE. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
37 39first strand
Strand 2
X
27 32anti-parallel
Strand 3
X
15 24anti-parallel
Strand 4
X
1 12anti-parallel
Strand 5
X
74 86anti-parallel
Strand 6
X
89 98anti-parallel
Strand 7
X
101 102anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
37 39first strand
Strand 2
Y
27 32anti-parallel
Strand 3
Y
15 24anti-parallel
Strand 4
Y
1 12anti-parallel
Strand 5
Y
75 86anti-parallel
Strand 6
Y
89 98anti-parallel
Strand 7
Y
101 102anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
37 39first strand
Strand 2
Z
27 32anti-parallel
Strand 3
Z
15 24anti-parallel
Strand 4
Z
1 12anti-parallel
Strand 5
Z
74 86anti-parallel
Strand 6
Z
89 98anti-parallel
Strand 7
Z
101 103anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il