Analysis of interatomic Contacts of Structural Units in PDB entry:
4FFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FFR entry

There is 1 chain in PDB entry 4FFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LEU 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4FFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
53 61Right-handed alpha
Helix 3
3
A
73 84Right-handed alpha
Helix 4
4
A
85 87Right-handed 310
Helix 5
5
A
94 102Right-handed alpha
Helix 6
6
A
103 114Right-handed alpha
Helix 7
7
A
204 217Right-handed alpha
Helix 8
8
A
247 257Right-handed alpha
Helix 9
9
A
259 268Right-handed alpha
Helix 10
10
A
293 295Right-handed 310
Helix 11
11
A
301 306Right-handed alpha
Helix 12
12
A
340 355Right-handed alpha
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There are 4 sheets in PDB entry 4FFR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
26 31parallel
Strand 3
A
3 7parallel
Strand 4
A
66 69parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
128 131anti-parallel
Strand 3
A
158 161anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
166 175anti-parallel
Strand 3
A
185 189anti-parallel
Strand 4
A
195 200anti-parallel
Strand 5
A
283 291anti-parallel
Strand 6
A
297 299anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 241first strand
Strand 2
A
221 231anti-parallel
Strand 3
A
166 175anti-parallel
Strand 4
A
185 189anti-parallel
Strand 5
A
195 200anti-parallel
Strand 6
A
283 291anti-parallel
Strand 7
A
331 338anti-parallel
Strand 8
A
320 326anti-parallel
Strand 9
A
310 317anti-parallel
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