Analysis of interatomic Contacts of Structural Units in PDB entry:
4FIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FIE entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 4FIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 49LYS 473
A
 LEU 475THR 590
B
 ARG 49LYS 473
B
 LEU 475THR 590
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4FIE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
298 312Right-handed alpha
Helix 2
2
A
316 319Right-handed 310
Helix 3
3
A
359 361Right-handed 310
Helix 4
4
A
362 373Right-handed alpha
Helix 5
5
A
403 410Right-handed alpha
Helix 6
6
A
413 434Right-handed alpha
Helix 7
7
A
483 488Right-handed alpha
Helix 8
8
A
494 511Right-handed alpha
Helix 9
9
A
519 530Right-handed alpha
Helix 10
10
A
542 553Right-handed alpha
Helix 11
11
A
562 567Right-handed alpha
Helix 12
12
A
568 575Right-handed 310
Helix 13
13
A
577 589Right-handed 310
Helix 14
14
B
298 312Right-handed alpha
Helix 15
15
B
316 319Right-handed 310
Helix 16
16
B
359 361Right-handed 310
Helix 17
17
B
362 373Right-handed alpha
Helix 18
18
B
403 410Right-handed alpha
Helix 19
19
B
413 434Right-handed alpha
Helix 20
20
B
483 488Right-handed alpha
Helix 21
21
B
494 511Right-handed alpha
Helix 22
22
B
519 530Right-handed alpha
Helix 23
23
B
542 553Right-handed alpha
Helix 24
24
B
562 567Right-handed alpha
Helix 25
25
B
568 575Right-handed 310
Helix 26
26
B
577 589Right-handed 310
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There are 8 sheets in PDB entry 4FIE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
476 477anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 329first strand
Strand 2
A
334 340anti-parallel
Strand 3
A
346 353anti-parallel
Strand 4
A
390 396anti-parallel
Strand 5
A
381 387anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 402first strand
Strand 2
A
446 448anti-parallel
Strand 3
A
454 456anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 437first strand
Strand 2
A
463 464anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
476 477anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 329first strand
Strand 2
B
334 340anti-parallel
Strand 3
B
346 353anti-parallel
Strand 4
B
390 396anti-parallel
Strand 5
B
381 387anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 402first strand
Strand 2
B
446 448anti-parallel
Strand 3
B
454 456anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
436 437first strand
Strand 2
B
463 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il