Analysis of interatomic Contacts of Structural Units in PDB entry:
4FJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FJO entry

There are 4 chains in PDB entry 4FJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1153THR 1249
B
 SER 565ARG 574
C
 MET 1ASN 210
D
 GLY 1865HIS 1894
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4FJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1162 1177Right-handed alpha
Helix 2
2
A
1181 1198Right-handed alpha
Helix 3
3
A
1200 1218Right-handed alpha
Helix 4
4
A
1220 1243Right-handed alpha
Helix 5
5
B
566 572Right-handed alpha
Helix 6
6
C
10 34Right-handed alpha
Helix 7
7
C
38 40Right-handed 310
Helix 8
8
C
57 77Right-handed alpha
Helix 9
9
C
116 132Right-handed alpha
Helix 10
10
C
133 137Right-handed 310
Helix 11
11
C
156 163Right-handed alpha
Helix 12
12
C
175 180Right-handed alpha
Helix 13
13
D
1869 1872Right-handed 310
Helix 14
14
D
1883 1891Right-handed alpha
Helix 15
15
D
1892 1894Right-handed 310
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There are 3 sheets in PDB entry 4FJO. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1245 1246first strand
Strand 2
C
184 192parallel
Strand 3
C
198 206anti-parallel
Strand 4
C
94 103anti-parallel
Strand 5
C
80 88anti-parallel
Strand 6
C
145 152anti-parallel
Strand 7
D
1874 1877anti-parallel
Strand 8
C
171 173anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
109 111anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 47first strand
Strand 2
C
50 55anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il