Analysis of interatomic Contacts of Structural Units in PDB entry:
4FJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FJV entry

There are 4 chains in PDB entry 4FJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASP 232
B
 ASP -6GLY 75
C
 GLU 3ASP 232
D
 ASP -6GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4FJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 22Right-handed 310
Helix 2
2
A
25 36Right-handed alpha
Helix 3
3
A
50 65Right-handed alpha
Helix 4
4
A
67 88Right-handed alpha
Helix 5
5
A
91 111Right-handed alpha
Helix 6
6
A
114 123Right-handed alpha
Helix 7
7
A
124 145Right-handed alpha
Helix 8
8
A
146 151Right-handed alpha
Helix 9
9
A
152 154Right-handed 310
Helix 10
10
A
159 168Right-handed alpha
Helix 11
11
A
176 188Right-handed alpha
Helix 12
12
B
22 35Right-handed alpha
Helix 13
13
B
37 39Right-handed 310
Helix 14
14
B
56 60Right-handed 310
Helix 15
15
C
16 22Right-handed 310
Helix 16
16
C
25 36Right-handed alpha
Helix 17
17
C
50 65Right-handed alpha
Helix 18
18
C
67 88Right-handed alpha
Helix 19
19
C
91 111Right-handed alpha
Helix 20
20
C
114 124Right-handed alpha
Helix 21
21
C
124 145Right-handed alpha
Helix 22
22
C
146 151Right-handed alpha
Helix 23
23
C
152 154Right-handed 310
Helix 24
24
C
159 168Right-handed alpha
Helix 25
25
C
176 188Right-handed alpha
Helix 26
26
D
22 35Right-handed alpha
Helix 27
27
D
37 39Right-handed 310
Helix 28
28
D
55 60Right-handed 310
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There are 4 sheets in PDB entry 4FJV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
225 230anti-parallel
Strand 4
A
216 221anti-parallel
Strand 5
A
191 196parallel
Strand 6
A
204 208anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 17first strand
Strand 2
B
1 7anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 14first strand
Strand 2
C
39 43anti-parallel
Strand 3
C
225 230anti-parallel
Strand 4
C
216 221anti-parallel
Strand 5
C
191 196parallel
Strand 6
C
204 208anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 17first strand
Strand 2
D
1 7anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il