Analysis of interatomic Contacts of Structural Units in PDB entry:
4FKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FKM entry

There are 78 chains in PDB entry 4FKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 47PRO 47
A
 ARG 49LEU 61
A
 LEU 64SER 78
A
 VAL 80LEU 81
A
 ASP 83ASP 83
A
 PHE 85PHE 85
A
 GLY 87THR 89
A
 ILE 91GLU 97
A
 VAL 99ALA 100
A
 GLU 102GLU 102
A
 PRO 104ASP 113
A
 ASP 115ILE 116
A
 TYR 119GLN 120
A
 VAL 122ASN 131
A
 HIS 133HIS 133
A
 TYR 135GLY 143
A
 ILE 145GLY 147
A
 GLU 149ASP 150
A
 VAL 152VAL 152
A
 ALA 154TRP 155
A
 ASP 158ALA 164
A
 ASP 166GLY 167
A
 GLU 169ILE 170
A
 ALA 173ASP 187
A
 LEU 190LEU 210
A
 MSE 212GLN 217
A
 LEU 219ALA 221
A
 ALA 223VAL 228
A
 GLN 230GLU 234
A
 TYR 236GLY 247
A
 PRO 249TRP 259
A
 ASN 261LEU 262
A
 ALA 264THR 265
A
 GLU 267VAL 271
A
 VAL 273ARG 290
A
 ASP 292LEU 293
A
 GLU 295GLU 295
A
 LEU 297ILE 298
A
 ALA 300ALA 301
B
 ASP 46PRO 47
B
 ARG 49LEU 61
B
 LEU 64SER 78
B
 VAL 80LEU 81
B
 ASP 83ASP 83
B
 PHE 85PHE 85
B
 GLY 87THR 89
B
 ILE 91GLU 97
B
 VAL 99ALA 100
B
 GLU 102GLU 102
B
 PRO 104ASP 113
B
 ASP 115ILE 116
B
 TYR 119GLN 120
B
 VAL 122ASN 131
B
 HIS 133HIS 133
B
 TYR 135GLY 143
B
 ILE 145GLY 147
B
 GLU 149ASP 150
B
 VAL 152VAL 152
B
 ALA 154TRP 155
B
 ASP 158ALA 164
B
 ASP 166GLY 167
B
 GLU 169ILE 170
B
 ALA 173ASP 187
B
 LEU 190LEU 210
B
 MSE 212GLN 217
B
 LEU 219ALA 221
B
 ALA 223VAL 228
B
 GLN 230GLU 234
B
 TYR 236GLY 247
B
 PRO 249TRP 259
B
 ASN 261LEU 262
B
 ALA 264THR 265
B
 GLU 267VAL 271
B
 VAL 273ARG 290
B
 ASP 292LEU 293
B
 GLU 295GLU 295
B
 LEU 297ILE 298
B
 ALA 300ALA 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4FKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 56Right-handed 310
Helix 2
2
A
57 64Right-handed alpha
Helix 3
3
A
74 77Right-handed 310
Helix 4
4
A
78 85Right-handed alpha
Helix 5
5
A
95 102Right-handed alpha
Helix 6
6
A
115 120Right-handed alpha
Helix 7
7
A
134 147Right-handed alpha
Helix 8
8
A
148 175Right-handed alpha
Helix 9
9
A
200 206Right-handed alpha
Helix 10
10
A
213 222Right-handed alpha
Helix 11
11
A
229 236Right-handed 310
Helix 12
12
A
251 255Right-handed 310
Helix 13
13
A
256 261Right-handed alpha
Helix 14
14
A
262 267Right-handed alpha
Helix 15
15
A
282 301Right-handed alpha
Helix 16
16
B
54 56Right-handed 310
Helix 17
17
B
57 64Right-handed alpha
Helix 18
18
B
74 77Right-handed 310
Helix 19
19
B
78 85Right-handed alpha
Helix 20
20
B
95 102Right-handed alpha
Helix 21
21
B
115 120Right-handed alpha
Helix 22
22
B
134 147Right-handed alpha
Helix 23
23
B
148 175Right-handed alpha
Helix 24
24
B
200 206Right-handed alpha
Helix 25
25
B
213 222Right-handed alpha
Helix 26
26
B
232 237Right-handed 310
Helix 27
27
B
251 255Right-handed 310
Helix 28
28
B
256 262Right-handed alpha
Helix 29
29
B
262 268Right-handed alpha
Helix 30
30
B
276 280Right-handed 310
Helix 31
31
B
282 302Right-handed alpha
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There are 4 sheets in PDB entry 4FKM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
67 72parallel
Strand 3
A
49 52parallel
Strand 4
A
106 109parallel
Strand 5
A
125 127parallel
Strand 6
B
125 127anti-parallel
Strand 7
B
106 109parallel
Strand 8
B
49 52parallel
Strand 9
B
67 72parallel
Strand 10
B
90 91parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
179 186parallel
Strand 3
A
189 193anti-parallel
Strand 4
A
225 227anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
179 186parallel
Strand 3
A
240 243parallel
Strand 4
A
270 272parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 228first strand
Strand 2
B
190 193anti-parallel
Strand 3
B
180 185anti-parallel
Strand 4
B
240 243parallel
Strand 5
B
270 272parallel
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