Analysis of interatomic Contacts of Structural Units in PDB entry:
4FM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FM9 entry

There are 3 chains in PDB entry 4FM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 433GLN 1190
C
 G 1 G 13
D
 C 1 C 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4FM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
451 454Right-handed 310
Helix 2
2
A
462 477Right-handed alpha
Helix 3
3
A
497 504Right-handed alpha
Helix 4
4
A
504 515Right-handed alpha
Helix 5
5
A
524 531Right-handed alpha
Helix 6
6
A
543 561Right-handed alpha
Helix 7
7
A
561 567Right-handed alpha
Helix 8
8
A
591 602Right-handed alpha
Helix 9
9
A
615 619Right-handed 310
Helix 10
10
A
620 630Right-handed alpha
Helix 11
11
A
630 634Right-handed alpha
Helix 12
12
A
643 654Right-handed alpha
Helix 13
13
A
657 679Right-handed alpha
Helix 14
14
A
695 702Right-handed alpha
Helix 15
15
A
702 715Right-handed alpha
Helix 16
16
A
723 736Right-handed alpha
Helix 17
17
A
744 755Right-handed alpha
Helix 18
18
A
761 773Right-handed alpha
Helix 19
19
A
811 818Right-handed alpha
Helix 20
20
A
821 825Right-handed 310
Helix 21
21
A
830 834Right-handed 310
Helix 22
22
A
868 882Right-handed alpha
Helix 23
23
A
931 939Right-handed alpha
Helix 24
24
A
939 945Right-handed alpha
Helix 25
25
A
973 984Right-handed alpha
Helix 26
26
A
984 989Right-handed alpha
Helix 27
27
A
1014 1060Right-handed alpha
Helix 28
28
A
1069 1081Right-handed alpha
Helix 29
29
A
1085 1092Right-handed alpha
Helix 30
30
A
1125 1130Right-handed alpha
Helix 31
31
A
1137 1161Right-handed alpha
Helix 32
32
A
1162 1190Right-handed alpha
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There are 7 sheets in PDB entry 4FM9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 486first strand
Strand 2
A
456 461parallel
Strand 3
A
535 539parallel
Strand 4
A
570 573parallel
Strand 5
A
635 639anti-parallel
Strand 6
A
692 694parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 589first strand
Strand 2
A
578 581anti-parallel
Strand 3
A
609 612anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 743first strand
Strand 2
A
807 808anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
853 856first strand
Strand 2
A
861 864anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
898 903first strand
Strand 2
A
906 910anti-parallel
Strand 3
A
992 996anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
913 914first strand
Strand 2
A
921 923anti-parallel
Strand 3
A
968 971anti-parallel
Strand 4
A
956 959anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1001 1003first strand
Strand 2
A
1009 1011anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il