Analysis of interatomic Contacts of Structural Units in PDB entry:
4FMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FMB entry

There are 6 chains in PDB entry 4FMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 40VAL 400
B
 PRO 6MET 176
C
 GLY 40VAL 400
D
 PRO 6MET 176
E
 GLY 40VAL 400
F
 GLU 7MET 176
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 4FMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 56Right-handed alpha
Helix 2
2
A
57 64Right-handed alpha
Helix 3
3
A
113 123Right-handed alpha
Helix 4
4
A
151 161Right-handed alpha
Helix 5
5
A
181 192Right-handed alpha
Helix 6
6
A
193 196Right-handed 310
Helix 7
7
A
208 219Right-handed alpha
Helix 8
8
A
235 247Right-handed alpha
Helix 9
9
A
254 265Right-handed alpha
Helix 10
10
A
267 277Right-handed alpha
Helix 11
11
A
286 308Right-handed alpha
Helix 12
12
A
376 384Right-handed alpha
Helix 13
13
A
385 389Right-handed 310
Helix 14
14
B
23 33Right-handed alpha
Helix 15
15
B
70 72Right-handed 310
Helix 16
16
B
73 79Right-handed alpha
Helix 17
17
B
95 101Right-handed alpha
Helix 18
18
B
101 113Right-handed alpha
Helix 19
19
B
135 145Right-handed alpha
Helix 20
20
B
160 174Right-handed alpha
Helix 21
21
C
47 56Right-handed alpha
Helix 22
22
C
57 64Right-handed alpha
Helix 23
23
C
113 123Right-handed alpha
Helix 24
24
C
151 161Right-handed alpha
Helix 25
25
C
181 192Right-handed alpha
Helix 26
26
C
193 196Right-handed 310
Helix 27
27
C
208 219Right-handed alpha
Helix 28
28
C
235 247Right-handed alpha
Helix 29
29
C
254 265Right-handed alpha
Helix 30
30
C
267 277Right-handed alpha
Helix 31
31
C
286 308Right-handed alpha
Helix 32
32
C
376 384Right-handed alpha
Helix 33
33
C
385 389Right-handed 310
Helix 34
34
D
23 33Right-handed alpha
Helix 35
35
D
70 72Right-handed 310
Helix 36
36
D
73 79Right-handed alpha
Helix 37
37
D
95 101Right-handed alpha
Helix 38
38
D
101 113Right-handed alpha
Helix 39
39
D
135 145Right-handed alpha
Helix 40
40
D
160 174Right-handed alpha
Helix 41
41
E
47 56Right-handed alpha
Helix 42
42
E
57 64Right-handed alpha
Helix 43
43
E
113 123Right-handed alpha
Helix 44
44
E
151 161Right-handed alpha
Helix 45
45
E
181 192Right-handed alpha
Helix 46
46
E
193 196Right-handed 310
Helix 47
47
E
208 219Right-handed alpha
Helix 48
48
E
235 247Right-handed alpha
Helix 49
49
E
254 265Right-handed alpha
Helix 50
50
E
267 277Right-handed alpha
Helix 51
51
E
286 308Right-handed alpha
Helix 52
52
E
376 384Right-handed alpha
Helix 53
53
E
385 389Right-handed 310
Helix 54
54
F
23 33Right-handed alpha
Helix 55
55
F
70 72Right-handed 310
Helix 56
56
F
73 79Right-handed alpha
Helix 57
57
F
95 101Right-handed alpha
Helix 58
58
F
101 113Right-handed alpha
Helix 59
59
F
135 145Right-handed alpha
Helix 60
60
F
160 174Right-handed alpha
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There are 12 sheets in PDB entry 4FMB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
77 83anti-parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
96 103anti-parallel
Strand 5
A
106 111anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
163 165parallel
Strand 3
A
390 399anti-parallel
Strand 4
A
136 142parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
163 165parallel
Strand 3
A
390 399anti-parallel
Strand 4
A
358 369anti-parallel
Strand 5
A
342 353anti-parallel
Strand 6
A
316 325anti-parallel
Strand 7
A
199 202parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 53first strand
Strand 2
B
60 66anti-parallel
Strand 3
B
10 17parallel
Strand 4
B
86 92parallel
Strand 5
B
118 124parallel
Strand 6
B
150 153parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 67first strand
Strand 2
C
77 83anti-parallel
Strand 3
C
86 93anti-parallel
Strand 4
C
96 103anti-parallel
Strand 5
C
106 111anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 129first strand
Strand 2
C
163 165parallel
Strand 3
C
390 399anti-parallel
Strand 4
C
136 142parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 129first strand
Strand 2
C
163 165parallel
Strand 3
C
390 399anti-parallel
Strand 4
C
358 369anti-parallel
Strand 5
C
342 353anti-parallel
Strand 6
C
316 325anti-parallel
Strand 7
C
199 202parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 53first strand
Strand 2
D
60 66anti-parallel
Strand 3
D
10 17parallel
Strand 4
D
86 92parallel
Strand 5
D
118 124parallel
Strand 6
D
150 153parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
65 67first strand
Strand 2
E
77 83anti-parallel
Strand 3
E
86 93anti-parallel
Strand 4
E
96 103anti-parallel
Strand 5
E
106 111anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
128 129first strand
Strand 2
E
163 165parallel
Strand 3
E
390 399anti-parallel
Strand 4
E
136 142parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
128 129first strand
Strand 2
E
163 165parallel
Strand 3
E
390 399anti-parallel
Strand 4
E
358 369anti-parallel
Strand 5
E
342 353anti-parallel
Strand 6
E
316 325anti-parallel
Strand 7
E
199 202parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
47 53first strand
Strand 2
F
60 66anti-parallel
Strand 3
F
10 17parallel
Strand 4
F
86 92parallel
Strand 5
F
118 124parallel
Strand 6
F
150 153parallel
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