Analysis of interatomic Contacts of Structural Units in PDB entry:
4FMD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4FMD entry

There are 5 chains in PDB entry 4FMD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 47	ASN 397
B	PRO 6	MET 176
C	GLU 47	ASN 397
D	PRO 6	MET 176
E	GLU 47	HIS 280

There are 63 helices in PDB entry 4FMD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	49	61	Right-handed alpha
Helix 2	2	A	68	80	Right-handed alpha
Helix 3	3	A	138	143	Right-handed 310
Helix 4	4	A	165	177	Right-handed alpha
Helix 5	5	A	201	210	Right-handed alpha
Helix 6	6	A	223	234	Right-handed alpha
Helix 7	7	A	244	251	Right-handed alpha
Helix 8	8	A	253	263	Right-handed alpha
Helix 9	9	A	267	279	Right-handed alpha
Helix 10	10	A	280	290	Right-handed alpha
Helix 11	11	A	291	295	Right-handed 310
Helix 12	12	A	296	302	Right-handed alpha
Helix 13	13	A	303	317	Right-handed alpha
Helix 14	14	A	376	384	Right-handed alpha
Helix 15	15	B	23	34	Right-handed alpha
Helix 16	16	B	70	72	Right-handed 310
Helix 17	17	B	73	79	Right-handed alpha
Helix 18	18	B	80	84	Right-handed 310
Helix 19	19	B	95	101	Right-handed alpha
Helix 20	20	B	101	113	Right-handed alpha
Helix 21	21	B	135	146	Right-handed alpha
Helix 22	22	B	160	176	Right-handed alpha
Helix 23	23	C	49	61	Right-handed alpha
Helix 24	24	C	68	80	Right-handed alpha
Helix 25	25	C	138	143	Right-handed 310
Helix 26	26	C	165	177	Right-handed alpha
Helix 27	27	C	201	210	Right-handed alpha
Helix 28	28	C	223	234	Right-handed alpha
Helix 29	29	C	244	251	Right-handed alpha
Helix 30	30	C	253	263	Right-handed alpha
Helix 31	31	C	267	279	Right-handed alpha
Helix 32	32	C	280	290	Right-handed alpha
Helix 33	33	C	291	295	Right-handed 310
Helix 34	34	C	296	317	Right-handed alpha
Helix 35	35	C	376	384	Right-handed alpha
Helix 36	36	D	23	34	Right-handed alpha
Helix 37	37	D	70	72	Right-handed 310
Helix 38	38	D	73	79	Right-handed alpha
Helix 39	39	D	95	113	Right-handed alpha
Helix 40	40	D	135	146	Right-handed alpha
Helix 41	41	D	160	176	Right-handed alpha
Helix 42	42	E	49	61	Right-handed alpha
Helix 43	43	E	68	80	Right-handed alpha
Helix 44	44	E	139	143	Right-handed 310
Helix 45	45	E	165	177	Right-handed alpha
Helix 46	46	E	201	210	Right-handed alpha
Helix 47	47	E	223	233	Right-handed alpha
Helix 48	48	E	244	251	Right-handed alpha
Helix 49	49	E	253	264	Right-handed alpha
Helix 50	50	E	267	279	Right-handed alpha
Helix 51	51	E	280	290	Right-handed alpha
Helix 52	52	E	291	295	Right-handed 310
Helix 53	53	E	296	317	Right-handed alpha
Helix 54	54	E	376	384	Right-handed alpha
Helix 55	55	F	23	34	Right-handed alpha
Helix 56	56	F	70	72	Right-handed 310
Helix 57	57	F	73	79	Right-handed alpha
Helix 58	58	F	80	84	Right-handed 310
Helix 59	59	F	95	101	Right-handed alpha
Helix 60	60	F	101	113	Right-handed alpha
Helix 61	61	F	135	144	Right-handed alpha
Helix 62	62	F	145	147	Right-handed 310
Helix 63	63	F	160	174	Right-handed alpha

There are 13 sheets in PDB entry 4FMD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	91	98	anti-parallel
Strand 3	A	104	110	anti-parallel
Strand 4	A	115	120	anti-parallel
Strand 5	A	126	131	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	181	183	parallel
Strand 3	A	387	395	anti-parallel
Strand 4	A	153	157	parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	181	183	parallel
Strand 3	A	387	395	anti-parallel
Strand 4	A	358	369	anti-parallel
Strand 5	A	338	349	anti-parallel
Strand 6	A	325	332	anti-parallel
Strand 7	A	214	217	parallel
Strand 8	A	220	222	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	55	first strand
Strand 2	B	58	67	anti-parallel
Strand 3	B	10	18	parallel
Strand 4	B	86	92	parallel
Strand 5	B	118	124	parallel
Strand 6	B	150	152	parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	91	98	anti-parallel
Strand 3	C	104	110	anti-parallel
Strand 4	C	115	120	anti-parallel
Strand 5	C	126	131	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	181	183	parallel
Strand 3	C	387	394	anti-parallel
Strand 4	C	153	156	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	181	183	parallel
Strand 3	C	387	394	anti-parallel
Strand 4	C	358	369	anti-parallel
Strand 5	C	338	349	anti-parallel
Strand 6	C	324	332	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	217	first strand
Strand 2	C	220	222	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	55	first strand
Strand 2	D	58	67	anti-parallel
Strand 3	D	13	18	parallel
Strand 4	D	86	92	parallel
Strand 5	D	118	124	parallel
Strand 6	D	150	152	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	85	first strand
Strand 2	E	91	98	anti-parallel
Strand 3	E	104	110	anti-parallel
Strand 4	E	115	120	anti-parallel
Strand 5	E	126	130	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	147	first strand
Strand 2	E	181	183	parallel
Strand 3	E	387	394	anti-parallel
Strand 4	E	153	156	parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	147	first strand
Strand 2	E	181	183	parallel
Strand 3	E	387	394	anti-parallel
Strand 4	E	358	369	anti-parallel
Strand 5	E	338	349	anti-parallel
Strand 6	E	324	332	anti-parallel
Strand 7	E	214	217	parallel
Strand 8	E	220	222	anti-parallel

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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	48	first strand
Strand 2	F	65	67	anti-parallel
Strand 3	F	15	18	parallel
Strand 4	F	86	92	parallel
Strand 5	F	118	124	parallel
Strand 6	F	150	152	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4FMD

Analysis of interatomic Contacts of Structural Units in PDB entry:
4FMD