Analysis of interatomic Contacts of Structural Units in PDB entry:
4FML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FML entry

There are 3 chains in PDB entry 4FML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 63LEU 266
B
 HIS 65LEU 266
C
 SER 68LEU 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4FML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
68 80Right-handed alpha
Helix 2
2
A
81 90Right-handed alpha
Helix 3
3
A
95 106Right-handed alpha
Helix 4
4
A
115 137Right-handed alpha
Helix 5
5
A
154 156Right-handed 310
Helix 6
6
A
157 165Right-handed alpha
Helix 7
7
A
236 242Right-handed alpha
Helix 8
8
B
68 80Right-handed alpha
Helix 9
9
B
81 90Right-handed alpha
Helix 10
10
B
95 106Right-handed alpha
Helix 11
11
B
115 137Right-handed alpha
Helix 12
12
B
154 156Right-handed 310
Helix 13
13
B
157 165Right-handed alpha
Helix 14
14
B
205 208Right-handed 310
Helix 15
15
B
236 243Right-handed alpha
Helix 16
16
C
69 81Right-handed alpha
Helix 17
17
C
81 90Right-handed alpha
Helix 18
18
C
97 106Right-handed alpha
Helix 19
19
C
126 136Right-handed alpha
Helix 20
20
C
236 243Right-handed alpha
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There are 6 sheets in PDB entry 4FML. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 150first strand
Strand 2
A
189 194anti-parallel
Strand 3
A
259 265parallel
Strand 4
A
222 231anti-parallel
Strand 5
A
170 173anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
216 218anti-parallel
Strand 3
A
202 203anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 150first strand
Strand 2
B
189 194anti-parallel
Strand 3
B
259 265parallel
Strand 4
B
216 231anti-parallel
Strand 5
B
170 179anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 150first strand
Strand 2
B
189 194anti-parallel
Strand 3
B
259 265parallel
Strand 4
B
216 231anti-parallel
Strand 5
B
202 203anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 150first strand
Strand 2
C
189 194anti-parallel
Strand 3
C
259 265parallel
Strand 4
C
222 231anti-parallel
Strand 5
C
170 173anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 179first strand
Strand 2
C
216 217anti-parallel
Strand 3
C
202 203anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il