Analysis of interatomic Contacts of Structural Units in PDB entry:
4FMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FMO entry

There are 3 chains in PDB entry 4FMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 506CYS 769
B
 GLU 651ILE 873
C
 THR 443ASN 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 4FMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
511 525Right-handed alpha
Helix 2
2
A
526 535Right-handed alpha
Helix 3
3
A
562 578Right-handed alpha
Helix 4
4
A
590 594Right-handed 310
Helix 5
5
A
596 602Right-handed alpha
Helix 6
6
A
609 623Right-handed alpha
Helix 7
7
A
623 632Right-handed alpha
Helix 8
8
A
643 645Right-handed 310
Helix 9
9
A
665 676Right-handed alpha
Helix 10
10
A
681 698Right-handed alpha
Helix 11
11
A
713 734Right-handed alpha
Helix 12
12
A
734 743Right-handed alpha
Helix 13
13
A
746 751Right-handed 310
Helix 14
14
A
759 763Right-handed alpha
Helix 15
15
B
652 666Right-handed alpha
Helix 16
16
B
667 673Right-handed alpha
Helix 17
17
B
702 718Right-handed alpha
Helix 18
18
B
746 751Right-handed alpha
Helix 19
19
B
781 794Right-handed alpha
Helix 20
20
B
805 820Right-handed alpha
Helix 21
21
B
828 839Right-handed alpha
Helix 22
22
B
840 842Right-handed 310
Helix 23
23
B
868 872Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 4FMO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 543first strand
Strand 2
A
548 553anti-parallel
Strand 3
A
556 561anti-parallel
Strand 4
A
753 758anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 585first strand
Strand 2
A
647 654anti-parallel
Strand 3
A
634 637anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
675 680first strand
Strand 2
B
684 691anti-parallel
Strand 3
B
694 701anti-parallel
Strand 4
B
855 860anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
722 731first strand
Strand 2
B
767 773anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il