Analysis of interatomic Contacts of Structural Units in PDB entry:
4FMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FMV entry

There is 1 chain in PDB entry 4FMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ALA 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4FMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 39Right-handed alpha
Helix 2
2
A
51 55Right-handed 310
Helix 3
3
A
56 61Right-handed 310
Helix 4
4
A
63 65Right-handed 310
Helix 5
5
A
66 79Right-handed alpha
Helix 6
6
A
91 93Right-handed 310
Helix 7
7
A
113 131Right-handed alpha
Helix 8
8
A
154 165Right-handed alpha
Helix 9
9
A
166 169Right-handed 310
Helix 10
10
A
182 191Right-handed alpha
Helix 11
11
A
192 199Right-handed alpha
Helix 12
12
A
210 215Right-handed 310
Helix 13
13
A
216 222Right-handed alpha
Helix 14
14
A
239 256Right-handed alpha
Helix 15
15
A
281 292Right-handed alpha
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There are 4 sheets in PDB entry 4FMV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
347 353anti-parallel
Strand 3
A
365 366anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
347 353anti-parallel
Strand 3
A
380 387anti-parallel
Strand 4
A
321 328anti-parallel
Strand 5
A
311 318anti-parallel
Strand 6
A
299 303anti-parallel
Strand 7
A
5 15anti-parallel
Strand 8
A
334 341parallel
Strand 9
A
371 376anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
45 49parallel
Strand 3
A
82 86parallel
Strand 4
A
137 139parallel
Strand 5
A
172 178parallel
Strand 6
A
201 205parallel
Strand 7
A
227 232parallel
Strand 8
A
261 266parallel
Strand 9
A
18 22parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 100first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
151 152parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il