Analysis of interatomic Contacts of Structural Units in PDB entry:
4FMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FMZ entry

There are 2 chains in PDB entry 4FMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 37GLN 376
B
 GLY 0ALA 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 4FMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 49Right-handed alpha
Helix 2
2
A
51 63Right-handed alpha
Helix 3
3
A
72 77Right-handed alpha
Helix 4
4
A
94 98Right-handed 310
Helix 5
5
A
114 118Right-handed 310
Helix 6
6
A
136 140Right-handed 310
Helix 7
7
A
158 162Right-handed 310
Helix 8
8
A
181 185Right-handed 310
Helix 9
9
A
203 209Right-handed 310
Helix 10
10
A
225 231Right-handed 310
Helix 11
11
A
247 253Right-handed 310
Helix 12
12
A
269 273Right-handed 310
Helix 13
13
A
291 295Right-handed 310
Helix 14
14
A
313 319Right-handed 310
Helix 15
15
A
333 335Right-handed 310
Helix 16
16
A
336 342Right-handed alpha
Helix 17
17
A
359 365Right-handed 310
Helix 18
18
B
37 41Right-handed 310
Helix 19
19
B
45 49Right-handed alpha
Helix 20
20
B
51 63Right-handed alpha
Helix 21
21
B
72 77Right-handed alpha
Helix 22
22
B
94 98Right-handed 310
Helix 23
23
B
114 118Right-handed 310
Helix 24
24
B
136 140Right-handed 310
Helix 25
25
B
158 162Right-handed 310
Helix 26
26
B
181 185Right-handed 310
Helix 27
27
B
203 209Right-handed 310
Helix 28
28
B
225 231Right-handed 310
Helix 29
29
B
247 253Right-handed 310
Helix 30
30
B
269 273Right-handed 310
Helix 31
31
B
291 295Right-handed 310
Helix 32
32
B
313 319Right-handed 310
Helix 33
33
B
333 335Right-handed 310
Helix 34
34
B
336 342Right-handed alpha
Helix 35
35
B
359 365Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 4FMZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
70 71anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
103 105parallel
Strand 3
A
125 127parallel
Strand 4
A
147 149parallel
Strand 5
A
169 171parallel
Strand 6
A
192 194parallel
Strand 7
A
214 216parallel
Strand 8
A
236 238parallel
Strand 9
A
258 260parallel
Strand 10
A
280 282parallel
Strand 11
A
302 304parallel
Strand 12
A
324 326parallel
Strand 13
A
348 350parallel
Strand 14
A
370 371parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
70 71anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
103 105parallel
Strand 3
B
125 127parallel
Strand 4
B
147 149parallel
Strand 5
B
169 171parallel
Strand 6
B
192 194parallel
Strand 7
B
214 216parallel
Strand 8
B
236 238parallel
Strand 9
B
258 260parallel
Strand 10
B
280 282parallel
Strand 11
B
302 304parallel
Strand 12
B
324 326parallel
Strand 13
B
348 350parallel
Strand 14
B
370 371parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il