Analysis of interatomic Contacts of Structural Units in PDB entry:
4FNP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4FNP entry

There are 4 chains in PDB entry 4FNP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 10	VAL 727
B	LYS 10	VAL 727
C	LYS 10	VAL 727
D	LYS 10	VAL 727

There are 70 helices in PDB entry 4FNP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	68	72	Right-handed 310
Helix 2	2	A	126	128	Right-handed 310
Helix 3	3	A	303	319	Right-handed alpha
Helix 4	4	A	335	340	Right-handed alpha
Helix 5	5	A	344	359	Right-handed alpha
Helix 6	6	A	392	403	Right-handed alpha
Helix 7	7	A	421	427	Right-handed alpha
Helix 8	8	A	452	469	Right-handed alpha
Helix 9	9	A	492	497	Right-handed 310
Helix 10	10	A	498	518	Right-handed alpha
Helix 11	11	A	534	539	Right-handed alpha
Helix 12	12	A	551	563	Right-handed alpha
Helix 13	13	A	567	569	Right-handed 310
Helix 14	14	A	588	597	Right-handed alpha
Helix 15	15	A	606	610	Right-handed 310
Helix 16	16	A	611	635	Right-handed alpha
Helix 17	17	A	700	706	Right-handed alpha
Helix 18	18	B	43	47	Right-handed 310
Helix 19	19	B	68	72	Right-handed 310
Helix 20	20	B	126	128	Right-handed 310
Helix 21	21	B	302	319	Right-handed alpha
Helix 22	22	B	335	340	Right-handed alpha
Helix 23	23	B	344	359	Right-handed alpha
Helix 24	24	B	392	403	Right-handed alpha
Helix 25	25	B	421	427	Right-handed alpha
Helix 26	26	B	452	469	Right-handed alpha
Helix 27	27	B	492	497	Right-handed 310
Helix 28	28	B	498	518	Right-handed alpha
Helix 29	29	B	534	539	Right-handed alpha
Helix 30	30	B	553	563	Right-handed alpha
Helix 31	31	B	567	569	Right-handed 310
Helix 32	32	B	588	597	Right-handed alpha
Helix 33	33	B	606	610	Right-handed 310
Helix 34	34	B	611	635	Right-handed alpha
Helix 35	35	B	700	706	Right-handed alpha
Helix 36	36	C	68	72	Right-handed 310
Helix 37	37	C	126	128	Right-handed 310
Helix 38	38	C	303	319	Right-handed alpha
Helix 39	39	C	335	340	Right-handed alpha
Helix 40	40	C	344	359	Right-handed alpha
Helix 41	41	C	392	403	Right-handed alpha
Helix 42	42	C	421	427	Right-handed alpha
Helix 43	43	C	452	469	Right-handed alpha
Helix 44	44	C	492	497	Right-handed 310
Helix 45	45	C	498	518	Right-handed alpha
Helix 46	46	C	534	539	Right-handed alpha
Helix 47	47	C	551	563	Right-handed alpha
Helix 48	48	C	567	569	Right-handed 310
Helix 49	49	C	588	597	Right-handed alpha
Helix 50	50	C	606	610	Right-handed 310
Helix 51	51	C	611	635	Right-handed alpha
Helix 52	52	C	700	706	Right-handed alpha
Helix 53	53	D	126	128	Right-handed 310
Helix 54	54	D	302	319	Right-handed alpha
Helix 55	55	D	335	340	Right-handed alpha
Helix 56	56	D	344	349	Right-handed alpha
Helix 57	57	D	351	359	Right-handed alpha
Helix 58	58	D	392	404	Right-handed alpha
Helix 59	59	D	421	427	Right-handed alpha
Helix 60	60	D	428	431	Right-handed 310
Helix 61	61	D	452	469	Right-handed alpha
Helix 62	62	D	492	497	Right-handed 310
Helix 63	63	D	498	518	Right-handed alpha
Helix 64	64	D	534	541	Right-handed alpha
Helix 65	65	D	551	563	Right-handed alpha
Helix 66	66	D	567	569	Right-handed 310
Helix 67	67	D	588	597	Right-handed alpha
Helix 68	68	D	606	610	Right-handed 310
Helix 69	69	D	611	635	Right-handed alpha
Helix 70	70	D	700	706	Right-handed alpha

There are 32 sheets in PDB entry 4FNP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	16	first strand
Strand 2	A	19	26	anti-parallel
Strand 3	A	30	38	anti-parallel

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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	92	first strand
Strand 2	A	173	185	anti-parallel
Strand 3	A	269	274	anti-parallel
Strand 4	A	257	263	anti-parallel
Strand 5	A	214	219	anti-parallel
Strand 6	D	214	219	anti-parallel
Strand 7	D	257	263	anti-parallel
Strand 8	D	269	274	anti-parallel
Strand 9	D	173	185	anti-parallel
Strand 10	D	89	92	anti-parallel

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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	173	185	anti-parallel
Strand 3	A	269	274	anti-parallel
Strand 4	A	257	263	anti-parallel
Strand 5	A	214	219	anti-parallel
Strand 6	D	214	219	anti-parallel
Strand 7	D	257	263	anti-parallel
Strand 8	D	269	274	anti-parallel
Strand 9	D	173	185	anti-parallel
Strand 10	D	282	284	anti-parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	111	first strand
Strand 2	A	130	139	anti-parallel
Strand 3	A	144	153	anti-parallel
Strand 4	A	158	167	anti-parallel
Strand 5	A	295	300	anti-parallel
Strand 6	A	246	251	anti-parallel
Strand 7	A	228	235	anti-parallel
Strand 8	A	191	196	anti-parallel
Strand 9	A	206	209	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	111	first strand
Strand 2	A	130	139	anti-parallel
Strand 3	A	144	153	anti-parallel
Strand 4	A	158	167	anti-parallel
Strand 5	A	289	291	anti-parallel

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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	362	365	parallel
Strand 3	A	407	412	parallel
Strand 4	A	474	477	parallel
Strand 5	A	522	525	parallel
Strand 6	A	543	545	parallel
Strand 7	A	571	576	parallel
Strand 8	A	600	604	parallel
Strand 9	A	332	334	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	446	447	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	636	641	first strand
Strand 2	A	648	654	anti-parallel
Strand 3	A	660	667	anti-parallel
Strand 4	A	718	726	anti-parallel
Strand 5	A	689	692	anti-parallel
Strand 6	A	696	699	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	679	first strand
Strand 2	A	708	709	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	16	first strand
Strand 2	B	19	26	anti-parallel
Strand 3	B	30	38	anti-parallel

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There are 10 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	92	first strand
Strand 2	B	173	185	anti-parallel
Strand 3	B	269	274	anti-parallel
Strand 4	B	257	263	anti-parallel
Strand 5	B	214	219	anti-parallel
Strand 6	C	214	219	anti-parallel
Strand 7	C	257	263	anti-parallel
Strand 8	C	269	274	anti-parallel
Strand 9	C	173	185	anti-parallel
Strand 10	C	89	92	anti-parallel

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There are 10 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	173	185	anti-parallel
Strand 3	B	269	274	anti-parallel
Strand 4	B	257	263	anti-parallel
Strand 5	B	214	219	anti-parallel
Strand 6	C	214	219	anti-parallel
Strand 7	C	257	263	anti-parallel
Strand 8	C	269	274	anti-parallel
Strand 9	C	173	185	anti-parallel
Strand 10	C	282	284	anti-parallel

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There are 9 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	111	first strand
Strand 2	B	130	138	anti-parallel
Strand 3	B	144	153	anti-parallel
Strand 4	B	158	167	anti-parallel
Strand 5	B	295	300	anti-parallel
Strand 6	B	246	251	anti-parallel
Strand 7	B	228	235	anti-parallel
Strand 8	B	191	196	anti-parallel
Strand 9	B	206	209	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	111	first strand
Strand 2	B	130	138	anti-parallel
Strand 3	B	144	153	anti-parallel
Strand 4	B	158	167	anti-parallel
Strand 5	B	289	291	anti-parallel

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There are 9 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	334	first strand
Strand 2	B	362	365	parallel
Strand 3	B	407	412	parallel
Strand 4	B	474	477	parallel
Strand 5	B	522	525	parallel
Strand 6	B	543	545	parallel
Strand 7	B	571	576	parallel
Strand 8	B	600	604	parallel
Strand 9	B	332	334	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	417	first strand
Strand 2	B	446	447	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	641	first strand
Strand 2	B	648	654	anti-parallel
Strand 3	B	660	667	anti-parallel
Strand 4	B	718	726	anti-parallel
Strand 5	B	689	692	anti-parallel
Strand 6	B	696	699	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	678	679	first strand
Strand 2	B	708	709	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	16	first strand
Strand 2	C	19	26	anti-parallel
Strand 3	C	30	38	anti-parallel

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There are 9 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	111	first strand
Strand 2	C	130	139	anti-parallel
Strand 3	C	144	153	anti-parallel
Strand 4	C	158	167	anti-parallel
Strand 5	C	295	300	anti-parallel
Strand 6	C	246	251	anti-parallel
Strand 7	C	228	235	anti-parallel
Strand 8	C	191	196	anti-parallel
Strand 9	C	206	209	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	111	first strand
Strand 2	C	130	139	anti-parallel
Strand 3	C	144	153	anti-parallel
Strand 4	C	158	167	anti-parallel
Strand 5	C	289	291	anti-parallel

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There are 9 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	334	first strand
Strand 2	C	362	365	parallel
Strand 3	C	407	412	parallel
Strand 4	C	474	477	parallel
Strand 5	C	522	525	parallel
Strand 6	C	543	545	parallel
Strand 7	C	571	576	parallel
Strand 8	C	600	604	parallel
Strand 9	C	332	334	parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	416	417	first strand
Strand 2	C	446	447	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	636	641	first strand
Strand 2	C	648	654	anti-parallel
Strand 3	C	660	667	anti-parallel
Strand 4	C	718	726	anti-parallel
Strand 5	C	689	692	anti-parallel
Strand 6	C	696	699	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	677	679	first strand
Strand 2	C	708	710	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	16	first strand
Strand 2	D	19	26	anti-parallel
Strand 3	D	30	38	anti-parallel

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There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	111	first strand
Strand 2	D	130	139	anti-parallel
Strand 3	D	144	153	anti-parallel
Strand 4	D	158	167	anti-parallel
Strand 5	D	295	300	anti-parallel
Strand 6	D	246	251	anti-parallel
Strand 7	D	228	235	anti-parallel
Strand 8	D	191	196	anti-parallel
Strand 9	D	206	209	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	111	first strand
Strand 2	D	130	139	anti-parallel
Strand 3	D	144	153	anti-parallel
Strand 4	D	158	167	anti-parallel
Strand 5	D	289	291	anti-parallel

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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	334	first strand
Strand 2	D	362	365	parallel
Strand 3	D	407	412	parallel
Strand 4	D	474	477	parallel
Strand 5	D	522	525	parallel
Strand 6	D	543	545	parallel
Strand 7	D	571	576	parallel
Strand 8	D	600	604	parallel
Strand 9	D	332	334	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	417	first strand
Strand 2	D	446	447	anti-parallel

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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	636	641	first strand
Strand 2	D	648	654	anti-parallel
Strand 3	D	660	667	anti-parallel
Strand 4	D	718	726	anti-parallel
Strand 5	D	689	692	anti-parallel
Strand 6	D	696	699	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	678	679	first strand
Strand 2	D	708	709	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4FNP

Analysis of interatomic Contacts of Structural Units in PDB entry:
4FNP