Analysis of interatomic Contacts of Structural Units in PDB entry:
4FNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FNV entry

There is 1 chain in PDB entry 4FNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 44LEU 702
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4FNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 53Right-handed alpha
Helix 2
2
A
60 69Right-handed alpha
Helix 3
3
A
71 86Right-handed alpha
Helix 4
4
A
102 112Right-handed alpha
Helix 5
5
A
126 130Right-handed 310
Helix 6
6
A
152 159Right-handed alpha
Helix 7
7
A
163 175Right-handed alpha
Helix 8
8
A
177 194Right-handed alpha
Helix 9
9
A
207 226Right-handed alpha
Helix 10
10
A
232 253Right-handed alpha
Helix 11
11
A
258 276Right-handed alpha
Helix 12
12
A
281 300Right-handed alpha
Helix 13
13
A
311 332Right-handed alpha
Helix 14
14
A
333 338Right-handed 310
Helix 15
15
A
345 356Right-handed alpha
Helix 16
16
A
358 363Right-handed 310
Helix 17
17
A
380 387Right-handed alpha
Helix 18
18
A
387 396Right-handed alpha
Helix 19
19
A
399 409Right-handed alpha
Helix 20
20
A
410 412Right-handed 310
Helix 21
21
A
497 505Right-handed alpha
Helix 22
22
A
506 509Right-handed 310
Helix 23
23
A
557 559Right-handed 310
Helix 24
24
A
593 595Right-handed 310
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There are 5 sheets in PDB entry 4FNV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 137first strand
Strand 2
A
140 141anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 426first strand
Strand 2
A
431 435anti-parallel
Strand 3
A
443 448anti-parallel
Strand 4
A
472 476anti-parallel
Strand 5
A
479 480anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 514first strand
Strand 2
A
573 580anti-parallel
Strand 3
A
636 647anti-parallel
Strand 4
A
619 627anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 530first strand
Strand 2
A
535 544anti-parallel
Strand 3
A
547 556anti-parallel
Strand 4
A
560 568anti-parallel
Strand 5
A
653 663anti-parallel
Strand 6
A
606 614anti-parallel
Strand 7
A
597 600anti-parallel
Strand 8
A
589 592anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 675first strand
Strand 2
A
684 691anti-parallel
Strand 3
A
694 701anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il