Analysis of interatomic Contacts of Structural Units in PDB entry:
4FPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FPV entry

There are 3 chains in PDB entry 4FPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 120THR 369
B
 THR 113THR 369
C
 T 1 G 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4FPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
137 153Right-handed alpha
Helix 2
2
A
163 174Right-handed alpha
Helix 3
3
A
239 241Right-handed 310
Helix 4
4
A
242 260Right-handed alpha
Helix 5
5
A
279 283Right-handed 310
Helix 6
6
A
292 296Right-handed alpha
Helix 7
7
A
299 303Right-handed 310
Helix 8
8
B
114 121Right-handed alpha
Helix 9
9
B
137 153Right-handed alpha
Helix 10
10
B
163 174Right-handed alpha
Helix 11
11
B
239 241Right-handed 310
Helix 12
12
B
242 260Right-handed alpha
Helix 13
13
B
279 283Right-handed 310
Helix 14
14
B
292 296Right-handed alpha
Helix 15
15
B
299 303Right-handed 310
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There are 6 sheets in PDB entry 4FPV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 181first strand
Strand 2
A
188 194anti-parallel
Strand 3
A
156 162anti-parallel
Strand 4
A
123 129parallel
Strand 5
A
362 368anti-parallel
Strand 6
A
339 346anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 207first strand
Strand 2
A
216 224anti-parallel
Strand 3
A
227 233anti-parallel
Strand 4
A
264 271parallel
Strand 5
A
325 330anti-parallel
Strand 6
A
289 291anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 307first strand
Strand 2
A
321 322anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 181first strand
Strand 2
B
188 194anti-parallel
Strand 3
B
156 162anti-parallel
Strand 4
B
123 129parallel
Strand 5
B
362 367anti-parallel
Strand 6
B
340 346anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 207first strand
Strand 2
B
216 224anti-parallel
Strand 3
B
227 233anti-parallel
Strand 4
B
264 271parallel
Strand 5
B
325 330anti-parallel
Strand 6
B
289 291anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 307first strand
Strand 2
B
321 322anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il