Analysis of interatomic Contacts of Structural Units in PDB entry:
4FQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FQD entry

There are 2 chains in PDB entry 4FQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11PRO 458
B
 PRO 11PRO 458
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4FQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 45Right-handed alpha
Helix 2
2
A
59 72Right-handed alpha
Helix 3
3
A
98 103Right-handed alpha
Helix 4
4
A
104 105Right-handed 310
Helix 5
5
A
106 110Right-handed 310
Helix 6
6
A
111 119Right-handed alpha
Helix 7
7
A
141 150Right-handed alpha
Helix 8
8
A
178 181Right-handed 310
Helix 9
9
A
191 205Right-handed alpha
Helix 10
10
A
218 232Right-handed alpha
Helix 11
11
A
250 253Right-handed 310
Helix 12
12
A
264 279Right-handed alpha
Helix 13
13
A
289 297Right-handed alpha
Helix 14
14
A
297 308Right-handed alpha
Helix 15
15
A
343 352Right-handed alpha
Helix 16
16
A
371 379Right-handed alpha
Helix 17
17
A
408 420Right-handed alpha
Helix 18
18
A
430 437Right-handed 310
Helix 19
19
A
440 448Right-handed alpha
Helix 20
20
B
33 47Right-handed alpha
Helix 21
21
B
59 72Right-handed alpha
Helix 22
22
B
98 103Right-handed alpha
Helix 23
23
B
104 105Right-handed 310
Helix 24
24
B
106 110Right-handed 310
Helix 25
25
B
111 120Right-handed alpha
Helix 26
26
B
141 151Right-handed alpha
Helix 27
27
B
178 181Right-handed 310
Helix 28
28
B
191 205Right-handed alpha
Helix 29
29
B
218 232Right-handed alpha
Helix 30
30
B
250 253Right-handed 310
Helix 31
31
B
264 279Right-handed alpha
Helix 32
32
B
289 297Right-handed alpha
Helix 33
33
B
297 308Right-handed alpha
Helix 34
34
B
343 352Right-handed alpha
Helix 35
35
B
371 379Right-handed alpha
Helix 36
36
B
408 422Right-handed alpha
Helix 37
37
B
430 437Right-handed 310
Helix 38
38
B
440 448Right-handed alpha
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There are 12 sheets in PDB entry 4FQD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 405first strand
Strand 2
A
425 429parallel
Strand 3
A
14 19anti-parallel
Strand 4
A
451 456anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
283 286parallel
Strand 3
A
317 320anti-parallel
Strand 4
A
311 313anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 79first strand
Strand 2
A
84 88anti-parallel
Strand 3
A
50 54anti-parallel
Strand 4
A
257 260parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
163 166anti-parallel
Strand 3
A
154 157anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
207 213parallel
Strand 3
A
242 248anti-parallel
Strand 4
A
235 239anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 334first strand
Strand 2
A
356 362parallel
Strand 3
A
388 393anti-parallel
Strand 4
A
382 385anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 405first strand
Strand 2
B
425 429parallel
Strand 3
B
14 19anti-parallel
Strand 4
B
451 456anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
283 286parallel
Strand 3
B
317 320anti-parallel
Strand 4
B
311 313anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 79first strand
Strand 2
B
84 88anti-parallel
Strand 3
B
51 54anti-parallel
Strand 4
B
257 260parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
163 166anti-parallel
Strand 3
B
154 157anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
207 213parallel
Strand 3
B
242 248anti-parallel
Strand 4
B
234 239anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 334first strand
Strand 2
B
356 362parallel
Strand 3
B
388 393anti-parallel
Strand 4
B
382 385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il