Analysis of interatomic Contacts of Structural Units in PDB entry:
4FVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FVJ entry

There are 8 chains in PDB entry 4FVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 89VAL 201
B
 SER 90LEU 203
C
 SER 90VAL 201
D
 ASP 89PRO 200
E
 SER 90GLN 202
F
 ASP 89VAL 201
G
 ASP 89VAL 201
H
 SER 90LEU 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4FVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
128 134Right-handed alpha
Helix 2
2
A
135 157Right-handed alpha
Helix 3
3
A
159 166Right-handed alpha
Helix 4
4
A
166 183Right-handed alpha
Helix 5
5
B
128 135Right-handed alpha
Helix 6
6
B
135 157Right-handed alpha
Helix 7
7
B
159 166Right-handed alpha
Helix 8
8
B
166 183Right-handed alpha
Helix 9
9
C
128 134Right-handed alpha
Helix 10
10
C
138 156Right-handed alpha
Helix 11
11
C
161 166Right-handed alpha
Helix 12
12
C
166 183Right-handed alpha
Helix 13
13
D
128 135Right-handed alpha
Helix 14
14
D
135 141Right-handed alpha
Helix 15
15
D
141 157Right-handed alpha
Helix 16
16
D
159 166Right-handed alpha
Helix 17
17
D
166 184Right-handed alpha
Helix 18
18
E
128 134Right-handed alpha
Helix 19
19
E
135 157Right-handed alpha
Helix 20
20
E
159 166Right-handed alpha
Helix 21
21
E
166 183Right-handed alpha
Helix 22
22
F
128 133Right-handed alpha
Helix 23
23
F
135 157Right-handed alpha
Helix 24
24
F
159 166Right-handed alpha
Helix 25
25
F
166 183Right-handed alpha
Helix 26
26
G
128 135Right-handed alpha
Helix 27
27
G
135 157Right-handed alpha
Helix 28
28
G
159 166Right-handed alpha
Helix 29
29
G
166 183Right-handed alpha
Helix 30
30
H
128 134Right-handed alpha
Helix 31
31
H
135 156Right-handed alpha
Helix 32
32
H
159 166Right-handed alpha
Helix 33
33
H
166 184Right-handed alpha
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There are 6 sheets in PDB entry 4FVJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 109first strand
Strand 2
A
115 126anti-parallel
Strand 3
A
187 198anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 109first strand
Strand 2
B
115 126anti-parallel
Strand 3
B
187 200anti-parallel
Strand 4
C
187 199anti-parallel
Strand 5
C
115 126anti-parallel
Strand 6
C
99 109anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 109first strand
Strand 2
D
115 126anti-parallel
Strand 3
D
187 199anti-parallel
Strand 4
E
187 198anti-parallel
Strand 5
E
115 126anti-parallel
Strand 6
E
99 109anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
99 109first strand
Strand 2
F
115 126anti-parallel
Strand 3
F
187 198anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
99 109first strand
Strand 2
G
115 126anti-parallel
Strand 3
G
187 198anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
99 109first strand
Strand 2
H
115 126anti-parallel
Strand 3
H
187 198anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il