Analysis of interatomic Contacts of Structural Units in PDB entry:
4FVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FVM entry

There is 1 chain in PDB entry 4FVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 349ARG 1228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4FVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
402 419Right-handed alpha
Helix 2
2
A
480 489Right-handed alpha
Helix 3
3
A
521 523Right-handed 310
Helix 4
4
A
597 606Right-handed alpha
Helix 5
5
A
615 631Right-handed alpha
Helix 6
6
A
643 655Right-handed alpha
Helix 7
7
A
659 664Right-handed 310
Helix 8
8
A
681 692Right-handed alpha
Helix 9
9
A
701 707Right-handed alpha
Helix 10
10
A
715 725Right-handed alpha
Helix 11
11
A
738 743Right-handed alpha
Helix 12
12
A
743 768Right-handed alpha
Helix 13
13
A
769 782Right-handed alpha
Helix 14
14
A
784 791Right-handed alpha
Helix 15
15
A
793 808Right-handed alpha
Helix 16
16
A
867 876Right-handed alpha
Helix 17
17
A
904 927Right-handed alpha
Helix 18
18
A
929 948Right-handed alpha
Helix 19
19
A
950 956Right-handed alpha
Helix 20
20
A
963 988Right-handed alpha
Helix 21
21
A
1008 1027Right-handed alpha
Helix 22
22
A
1079 1094Right-handed alpha
Helix 23
23
A
1100 1119Right-handed alpha
Helix 24
24
A
1123 1128Right-handed 310
Helix 25
25
A
1136 1140Right-handed 310
Helix 26
26
A
1142 1145Right-handed 310
Helix 27
27
A
1146 1159Right-handed alpha
Helix 28
28
A
1196 1201Right-handed alpha
Helix 29
29
A
1202 1205Right-handed 310
Helix 30
30
A
1209 1216Right-handed alpha
Helix 31
31
A
1218 1226Right-handed alpha
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There are 6 sheets in PDB entry 4FVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 519first strand
Strand 2
A
379 386parallel
Strand 3
A
365 373anti-parallel
Strand 4
A
352 362anti-parallel
Strand 5
A
496 499anti-parallel
Strand 6
A
525 527anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 431first strand
Strand 2
A
442 451anti-parallel
Strand 3
A
390 397anti-parallel
Strand 4
A
471 475anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 612first strand
Strand 2
A
581 586parallel
Strand 3
A
553 567anti-parallel
Strand 4
A
536 548anti-parallel
Strand 5
A
634 637parallel
Strand 6
A
695 698parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
1033 1045anti-parallel
Strand 3
A
860 864anti-parallel
Strand 4
A
999 1003anti-parallel
Strand 5
A
991 995anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
1033 1045anti-parallel
Strand 3
A
1048 1053anti-parallel
Strand 4
A
1065 1069anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1129 1132first strand
Strand 2
A
1167 1172anti-parallel
Strand 3
A
1193 1195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il