Analysis of interatomic Contacts of Structural Units in PDB entry:
4FYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FYD entry

There are 6 chains in PDB entry 4FYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 349GLY 1242
B
 THR 349GLY 1242
C
 T 1 C 16
D
 T 1 C 16
E
 C 1 G 12
F
 C 1 G 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 4FYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
402 419Right-handed alpha
Helix 2
2
A
480 489Right-handed alpha
Helix 3
3
A
521 523Right-handed 310
Helix 4
4
A
597 606Right-handed alpha
Helix 5
5
A
615 631Right-handed alpha
Helix 6
6
A
643 655Right-handed alpha
Helix 7
7
A
659 664Right-handed 310
Helix 8
8
A
682 691Right-handed alpha
Helix 9
9
A
701 708Right-handed alpha
Helix 10
10
A
715 725Right-handed alpha
Helix 11
11
A
738 743Right-handed alpha
Helix 12
12
A
743 768Right-handed alpha
Helix 13
13
A
769 782Right-handed alpha
Helix 14
14
A
784 791Right-handed alpha
Helix 15
15
A
793 807Right-handed alpha
Helix 16
16
A
867 876Right-handed alpha
Helix 17
17
A
904 926Right-handed alpha
Helix 18
18
A
929 953Right-handed alpha
Helix 19
19
A
963 987Right-handed alpha
Helix 20
20
A
1008 1025Right-handed alpha
Helix 21
21
A
1071 1075Right-handed 310
Helix 22
22
A
1079 1094Right-handed alpha
Helix 23
23
A
1098 1120Right-handed alpha
Helix 24
24
A
1123 1128Right-handed 310
Helix 25
25
A
1140 1145Right-handed 310
Helix 26
26
A
1146 1159Right-handed alpha
Helix 27
27
A
1189 1191Right-handed 310
Helix 28
28
A
1196 1200Right-handed alpha
Helix 29
29
A
1201 1205Right-handed 310
Helix 30
30
A
1209 1216Right-handed alpha
Helix 31
31
A
1218 1227Right-handed alpha
Helix 32
32
A
1233 1242Right-handed alpha
Helix 33
33
B
402 419Right-handed alpha
Helix 34
34
B
480 489Right-handed alpha
Helix 35
35
B
521 523Right-handed 310
Helix 36
36
B
597 606Right-handed alpha
Helix 37
37
B
615 631Right-handed alpha
Helix 38
38
B
643 655Right-handed alpha
Helix 39
39
B
659 664Right-handed 310
Helix 40
40
B
682 691Right-handed alpha
Helix 41
41
B
701 708Right-handed alpha
Helix 42
42
B
715 725Right-handed alpha
Helix 43
43
B
738 743Right-handed alpha
Helix 44
44
B
743 768Right-handed alpha
Helix 45
45
B
769 782Right-handed alpha
Helix 46
46
B
784 791Right-handed alpha
Helix 47
47
B
793 807Right-handed alpha
Helix 48
48
B
867 876Right-handed alpha
Helix 49
49
B
904 926Right-handed alpha
Helix 50
50
B
929 953Right-handed alpha
Helix 51
51
B
963 987Right-handed alpha
Helix 52
52
B
1008 1025Right-handed alpha
Helix 53
53
B
1071 1075Right-handed 310
Helix 54
54
B
1079 1094Right-handed alpha
Helix 55
55
B
1098 1120Right-handed alpha
Helix 56
56
B
1123 1128Right-handed 310
Helix 57
57
B
1140 1145Right-handed 310
Helix 58
58
B
1146 1159Right-handed alpha
Helix 59
59
B
1189 1191Right-handed 310
Helix 60
60
B
1196 1200Right-handed alpha
Helix 61
61
B
1201 1205Right-handed 310
Helix 62
62
B
1209 1216Right-handed alpha
Helix 63
63
B
1218 1227Right-handed alpha
Helix 64
64
B
1233 1242Right-handed alpha
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There are 13 sheets in PDB entry 4FYD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 519first strand
Strand 2
A
379 386parallel
Strand 3
A
365 373anti-parallel
Strand 4
A
352 362anti-parallel
Strand 5
A
496 499anti-parallel
Strand 6
A
525 527anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 431first strand
Strand 2
A
442 451anti-parallel
Strand 3
A
390 397anti-parallel
Strand 4
A
471 475anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 612first strand
Strand 2
A
581 586parallel
Strand 3
A
553 567anti-parallel
Strand 4
A
536 548anti-parallel
Strand 5
A
634 637parallel
Strand 6
A
695 698parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
1032 1045anti-parallel
Strand 3
A
860 865anti-parallel
Strand 4
A
999 1003anti-parallel
Strand 5
A
991 995anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
1032 1045anti-parallel
Strand 3
A
1048 1056anti-parallel
Strand 4
A
1062 1069anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1129 1132first strand
Strand 2
A
1167 1172anti-parallel
Strand 3
A
1193 1195anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
515 519first strand
Strand 2
B
379 386parallel
Strand 3
B
365 373anti-parallel
Strand 4
B
352 362anti-parallel
Strand 5
B
496 499anti-parallel
Strand 6
B
525 527anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
425 431first strand
Strand 2
B
442 451anti-parallel
Strand 3
B
390 397anti-parallel
Strand 4
B
471 475anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
536 548first strand
Strand 2
B
553 567anti-parallel
Strand 3
B
581 586anti-parallel
Strand 4
B
609 612parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
634 637first strand
Strand 2
B
695 698parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
854 856first strand
Strand 2
B
1032 1045anti-parallel
Strand 3
B
860 865anti-parallel
Strand 4
B
999 1003anti-parallel
Strand 5
B
991 995anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
854 856first strand
Strand 2
B
1032 1045anti-parallel
Strand 3
B
1048 1056anti-parallel
Strand 4
B
1062 1069anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1129 1132first strand
Strand 2
B
1167 1172anti-parallel
Strand 3
B
1193 1195anti-parallel
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