Analysis of interatomic Contacts of Structural Units in PDB entry:
4FYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FYP entry

There are 2 chains in PDB entry 4FYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 49HIS 276
B
 SER 51LEU 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 4FYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 66Right-handed alpha
Helix 2
2
A
76 78Right-handed 310
Helix 3
3
A
79 88Right-handed alpha
Helix 4
4
A
91 110Right-handed alpha
Helix 5
5
A
132 137Right-handed alpha
Helix 6
6
A
138 143Right-handed 310
Helix 7
7
A
149 157Right-handed alpha
Helix 8
8
A
164 177Right-handed alpha
Helix 9
9
A
191 202Right-handed alpha
Helix 10
10
A
220 235Right-handed alpha
Helix 11
11
A
246 251Right-handed 310
Helix 12
12
B
56 66Right-handed alpha
Helix 13
13
B
76 78Right-handed 310
Helix 14
14
B
79 88Right-handed alpha
Helix 15
15
B
91 109Right-handed alpha
Helix 16
16
B
132 139Right-handed alpha
Helix 17
17
B
149 157Right-handed alpha
Helix 18
18
B
164 177Right-handed alpha
Helix 19
19
B
191 202Right-handed alpha
Helix 20
20
B
220 235Right-handed alpha
Helix 21
21
B
246 251Right-handed 310
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There are 2 sheets in PDB entry 4FYP. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 213first strand
Strand 2
A
180 188parallel
Strand 3
A
119 123parallel
Strand 4
A
238 244parallel
Strand 5
A
257 260parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 213first strand
Strand 2
B
180 188parallel
Strand 3
B
119 123parallel
Strand 4
B
238 244parallel
Strand 5
B
257 260parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il