Analysis of interatomic Contacts of Structural Units in PDB entry:
4FYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FYQ entry

There is 1 chain in PDB entry 4FYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 68LYS 967
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 4FYQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
69 73Right-handed 310
Helix 2
2
A
216 220Right-handed 310
Helix 3
3
A
276 280Right-handed 310
Helix 4
4
A
305 311Right-handed alpha
Helix 5
5
A
314 332Right-handed alpha
Helix 6
6
A
364 368Right-handed alpha
Helix 7
7
A
375 395Right-handed alpha
Helix 8
8
A
403 406Right-handed 310
Helix 9
9
A
407 426Right-handed alpha
Helix 10
10
A
430 433Right-handed 310
Helix 11
11
A
434 439Right-handed alpha
Helix 12
12
A
439 448Right-handed alpha
Helix 13
13
A
458 462Right-handed 310
Helix 14
14
A
464 471Right-handed alpha
Helix 15
15
A
473 492Right-handed alpha
Helix 16
16
A
492 508Right-handed alpha
Helix 17
17
A
513 528Right-handed alpha
Helix 18
18
A
535 545Right-handed alpha
Helix 19
19
A
610 613Right-handed 310
Helix 20
20
A
624 627Right-handed 310
Helix 21
21
A
635 650Right-handed alpha
Helix 22
22
A
651 653Right-handed 310
Helix 23
23
A
654 671Right-handed alpha
Helix 24
24
A
675 682Right-handed alpha
Helix 25
25
A
683 689Right-handed 310
Helix 26
26
A
691 710Right-handed alpha
Helix 27
27
A
714 737Right-handed alpha
Helix 28
28
A
746 763Right-handed alpha
Helix 29
29
A
765 782Right-handed alpha
Helix 30
30
A
789 791Right-handed 310
Helix 31
31
A
792 804Right-handed alpha
Helix 32
32
A
805 818Right-handed alpha
Helix 33
33
A
821 832Right-handed alpha
Helix 34
34
A
833 835Right-handed 310
Helix 35
35
A
837 849Right-handed alpha
Helix 36
36
A
855 857Right-handed 310
Helix 37
37
A
858 869Right-handed alpha
Helix 38
38
A
871 890Right-handed alpha
Helix 39
39
A
900 907Right-handed alpha
Helix 40
40
A
911 926Right-handed alpha
Helix 41
41
A
930 932Right-handed 310
Helix 42
42
A
933 966Right-handed alpha
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There are 10 sheets in PDB entry 4FYQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
174 185anti-parallel
Strand 3
A
137 141anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
174 185anti-parallel
Strand 3
A
102 113anti-parallel
Strand 4
A
80 91anti-parallel
Strand 5
A
232 240parallel
Strand 6
A
264 268anti-parallel
Strand 7
A
256 257anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
161 166anti-parallel
Strand 3
A
150 156anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 200first strand
Strand 2
A
203 211anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
282 285anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 293first strand
Strand 2
A
299 304anti-parallel
Strand 3
A
340 346parallel
Strand 4
A
359 363parallel
Strand 5
A
353 354anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 401first strand
Strand 2
A
510 512parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 608first strand
Strand 2
A
560 565anti-parallel
Strand 3
A
550 555anti-parallel
Strand 4
A
631 634parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 588first strand
Strand 2
A
600 602anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 596first strand
Strand 2
A
590 592anti-parallel
Strand 3
A
620 622anti-parallel
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