Analysis of interatomic Contacts of Structural Units in PDB entry:
4FYZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4FYZ entry

There are 2 chains in PDB entry 4FYZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8GLU 404
B
 THR 8GLU 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4FYZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 39Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
57 67Right-handed alpha
Helix 4
4
A
96 107Right-handed alpha
Helix 5
5
A
110 115Right-handed alpha
Helix 6
6
A
117 131Right-handed alpha
Helix 7
7
A
140 144Right-handed alpha
Helix 8
8
A
146 158Right-handed alpha
Helix 9
9
A
163 176Right-handed alpha
Helix 10
10
A
179 204Right-handed alpha
Helix 11
11
A
208 215Right-handed alpha
Helix 12
12
A
224 241Right-handed alpha
Helix 13
13
A
241 257Right-handed alpha
Helix 14
14
A
257 267Right-handed alpha
Helix 15
15
A
270 283Right-handed alpha
Helix 16
16
A
311 316Right-handed alpha
Helix 17
17
A
342 346Right-handed 310
Helix 18
18
A
349 368Right-handed alpha
Helix 19
19
B
27 39Right-handed alpha
Helix 20
20
B
47 51Right-handed 310
Helix 21
21
B
57 67Right-handed alpha
Helix 22
22
B
96 106Right-handed alpha
Helix 23
23
B
107 109Right-handed 310
Helix 24
24
B
110 115Right-handed alpha
Helix 25
25
B
117 131Right-handed alpha
Helix 26
26
B
140 144Right-handed alpha
Helix 27
27
B
146 158Right-handed alpha
Helix 28
28
B
163 176Right-handed alpha
Helix 29
29
B
179 204Right-handed alpha
Helix 30
30
B
208 215Right-handed alpha
Helix 31
31
B
224 241Right-handed alpha
Helix 32
32
B
241 257Right-handed alpha
Helix 33
33
B
257 267Right-handed alpha
Helix 34
34
B
270 283Right-handed alpha
Helix 35
35
B
311 316Right-handed alpha
Helix 36
36
B
342 346Right-handed 310
Helix 37
37
B
349 368Right-handed alpha
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There are 8 sheets in PDB entry 4FYZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
52 55anti-parallel
Strand 3
A
307 310parallel
Strand 4
A
287 291anti-parallel
Strand 5
A
71 72anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 139first strand
Strand 2
A
393 395anti-parallel
Strand 3
A
372 373anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
300 302anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 382first strand
Strand 2
A
388 391anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
52 55anti-parallel
Strand 3
B
307 310parallel
Strand 4
B
287 291anti-parallel
Strand 5
B
71 72anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
393 395anti-parallel
Strand 3
B
372 373anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 297first strand
Strand 2
B
300 302anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 382first strand
Strand 2
B
388 391anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il