Analysis of interatomic Contacts of Structural Units in PDB entry:
4G0D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4G0D entry

There are 8 chains in PDB entry 4G0D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 104	CYS 471
B	TYR 104	CYS 471
C	TYR 104	CYS 471
D	TYR 104	CYS 471
W	SER 32	THR 50
X	GLY 25	THR 50
Y	GLU 28	THR 50
Z	GLU 28	THR 50

There are 35 helices in PDB entry 4G0D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	130	147	Right-handed alpha
Helix 2	2	A	216	228	Right-handed alpha
Helix 3	3	A	255	267	Right-handed alpha
Helix 4	4	A	324	326	Right-handed 310
Helix 5	5	A	420	424	Right-handed alpha
Helix 6	6	A	466	470	Right-handed 310
Helix 7	7	B	130	147	Right-handed alpha
Helix 8	8	B	216	229	Right-handed alpha
Helix 9	9	B	255	267	Right-handed alpha
Helix 10	10	B	324	326	Right-handed 310
Helix 11	11	B	341	344	Right-handed 310
Helix 12	12	B	371	374	Right-handed 310
Helix 13	13	B	420	424	Right-handed alpha
Helix 14	14	B	466	470	Right-handed 310
Helix 15	15	C	130	147	Right-handed alpha
Helix 16	16	C	216	228	Right-handed alpha
Helix 17	17	C	255	267	Right-handed alpha
Helix 18	18	C	323	327	Right-handed alpha
Helix 19	19	C	341	344	Right-handed 310
Helix 20	20	C	371	374	Right-handed 310
Helix 21	21	C	420	424	Right-handed alpha
Helix 22	22	C	466	470	Right-handed 310
Helix 23	23	D	130	147	Right-handed alpha
Helix 24	24	D	216	228	Right-handed alpha
Helix 25	25	D	255	267	Right-handed alpha
Helix 26	26	D	324	326	Right-handed 310
Helix 27	27	D	341	344	Right-handed 310
Helix 28	28	D	371	374	Right-handed 310
Helix 29	29	D	420	424	Right-handed alpha
Helix 30	30	D	466	470	Right-handed 310
Helix 31	31	W	37	42	Right-handed alpha
Helix 32	32	X	32	43	Right-handed alpha
Helix 33	33	Y	34	36	Right-handed 310
Helix 34	34	Y	37	42	Right-handed alpha
Helix 35	35	Z	32	43	Right-handed alpha

There are 34 sheets in PDB entry 4G0D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	155	first strand
Strand 2	A	117	122	parallel
Strand 3	A	163	168	parallel
Strand 4	A	199	202	parallel
Strand 5	A	183	188	anti-parallel
Strand 6	W	44	48	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	214	215	parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	296	first strand
Strand 2	A	299	304	anti-parallel
Strand 3	A	307	311	anti-parallel
Strand 4	A	319	322	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	340	first strand
Strand 2	A	345	350	anti-parallel
Strand 3	A	353	358	anti-parallel
Strand 4	A	361	362	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	340	first strand
Strand 2	A	345	350	anti-parallel
Strand 3	A	353	358	anti-parallel
Strand 4	A	368	369	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	387	first strand
Strand 2	A	393	398	anti-parallel
Strand 3	A	401	406	anti-parallel
Strand 4	A	411	412	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	387	first strand
Strand 2	A	393	398	anti-parallel
Strand 3	A	401	406	anti-parallel
Strand 4	A	418	419	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	437	first strand
Strand 2	A	440	445	anti-parallel
Strand 3	A	448	453	anti-parallel
Strand 4	A	458	464	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	156	first strand
Strand 2	B	117	122	parallel
Strand 3	B	163	168	parallel
Strand 4	B	199	202	parallel
Strand 5	B	183	188	anti-parallel
Strand 6	X	44	48	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	214	215	parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	296	first strand
Strand 2	B	299	304	anti-parallel
Strand 3	B	307	311	anti-parallel
Strand 4	B	319	322	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	340	first strand
Strand 2	B	345	350	anti-parallel
Strand 3	B	353	358	anti-parallel
Strand 4	B	361	362	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	340	first strand
Strand 2	B	345	350	anti-parallel
Strand 3	B	353	358	anti-parallel
Strand 4	B	368	369	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	387	first strand
Strand 2	B	393	398	anti-parallel
Strand 3	B	401	406	anti-parallel
Strand 4	B	411	412	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	387	first strand
Strand 2	B	393	398	anti-parallel
Strand 3	B	401	406	anti-parallel
Strand 4	B	418	419	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	437	first strand
Strand 2	B	440	445	anti-parallel
Strand 3	B	448	453	anti-parallel
Strand 4	B	458	464	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	230	231	anti-parallel

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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	155	first strand
Strand 2	C	117	122	parallel
Strand 3	C	163	168	parallel
Strand 4	C	199	202	parallel
Strand 5	C	183	188	anti-parallel
Strand 6	Y	44	48	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	214	215	parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	296	first strand
Strand 2	C	299	304	anti-parallel
Strand 3	C	307	311	anti-parallel
Strand 4	C	319	322	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	340	first strand
Strand 2	C	345	350	anti-parallel
Strand 3	C	353	358	anti-parallel
Strand 4	C	361	362	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	340	first strand
Strand 2	C	345	350	anti-parallel
Strand 3	C	353	358	anti-parallel
Strand 4	C	368	369	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	388	first strand
Strand 2	C	393	398	anti-parallel
Strand 3	C	401	406	anti-parallel
Strand 4	C	411	412	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	388	first strand
Strand 2	C	393	398	anti-parallel
Strand 3	C	401	406	anti-parallel
Strand 4	C	418	419	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	433	437	first strand
Strand 2	C	440	445	anti-parallel
Strand 3	C	448	453	anti-parallel
Strand 4	C	459	464	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	106	first strand
Strand 2	D	230	231	anti-parallel

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There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	156	first strand
Strand 2	D	117	122	parallel
Strand 3	D	163	168	parallel
Strand 4	D	199	202	parallel
Strand 5	D	183	188	anti-parallel
Strand 6	Z	44	48	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	214	215	parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	292	296	first strand
Strand 2	D	299	304	anti-parallel
Strand 3	D	307	311	anti-parallel
Strand 4	D	319	322	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	340	first strand
Strand 2	D	345	350	anti-parallel
Strand 3	D	353	358	anti-parallel
Strand 4	D	361	362	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	340	first strand
Strand 2	D	345	350	anti-parallel
Strand 3	D	353	358	anti-parallel
Strand 4	D	368	369	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	388	first strand
Strand 2	D	393	398	anti-parallel
Strand 3	D	401	406	anti-parallel
Strand 4	D	411	412	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	384	388	first strand
Strand 2	D	393	398	anti-parallel
Strand 3	D	401	406	anti-parallel
Strand 4	D	418	419	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	433	437	first strand
Strand 2	D	440	445	anti-parallel
Strand 3	D	448	453	anti-parallel
Strand 4	D	458	464	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4G0D

Analysis of interatomic Contacts of Structural Units in PDB entry:
4G0D