Analysis of interatomic Contacts of Structural Units in PDB entry:
4G3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4G3J entry

There are 3 chains in PDB entry 4G3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 29	ARG 476
B	GLY 29	ARG 476
C	GLY 29	PHE 394

There are101 helices in PDB entry 4G3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	44	51	Right-handed alpha
Helix 2	2	A	51	63	Right-handed alpha
Helix 3	3	A	82	85	Right-handed 310
Helix 4	4	A	86	91	Right-handed alpha
Helix 5	5	A	100	105	Right-handed 310
Helix 6	6	A	106	111	Right-handed alpha
Helix 7	7	A	114	118	Right-handed 310
Helix 8	8	A	119	133	Right-handed alpha
Helix 9	9	A	134	137	Right-handed 310
Helix 10	10	A	138	158	Right-handed alpha
Helix 11	11	A	167	184	Right-handed alpha
Helix 12	12	A	185	192	Right-handed alpha
Helix 13	13	A	193	206	Right-handed alpha
Helix 14	14	A	207	208	Right-handed 310
Helix 15	15	A	209	214	Right-handed 310
Helix 16	16	A	215	220	Right-handed 310
Helix 17	17	A	223	255	Right-handed alpha
Helix 18	18	A	260	267	Right-handed alpha
Helix 19	19	A	277	309	Right-handed alpha
Helix 20	20	A	312	323	Right-handed alpha
Helix 21	21	A	331	338	Right-handed alpha
Helix 22	22	A	339	353	Right-handed alpha
Helix 23	23	A	383	388	Right-handed alpha
Helix 24	24	A	417	421	Right-handed 310
Helix 25	25	A	424	442	Right-handed alpha
Helix 26	26	A	466	468	Right-handed 310
Helix 27	27	B	44	51	Right-handed alpha
Helix 28	28	B	51	64	Right-handed alpha
Helix 29	29	B	82	85	Right-handed 310
Helix 30	30	B	86	91	Right-handed alpha
Helix 31	31	B	100	105	Right-handed 310
Helix 32	32	B	106	111	Right-handed alpha
Helix 33	33	B	114	118	Right-handed 310
Helix 34	34	B	119	133	Right-handed alpha
Helix 35	35	B	134	137	Right-handed 310
Helix 36	36	B	138	158	Right-handed alpha
Helix 37	37	B	167	184	Right-handed alpha
Helix 38	38	B	185	192	Right-handed alpha
Helix 39	39	B	193	207	Right-handed alpha
Helix 40	40	B	208	214	Right-handed 310
Helix 41	41	B	215	221	Right-handed 310
Helix 42	42	B	223	254	Right-handed alpha
Helix 43	43	B	260	267	Right-handed alpha
Helix 44	44	B	277	309	Right-handed alpha
Helix 45	45	B	312	324	Right-handed alpha
Helix 46	46	B	331	338	Right-handed alpha
Helix 47	47	B	339	353	Right-handed alpha
Helix 48	48	B	383	388	Right-handed alpha
Helix 49	49	B	417	421	Right-handed 310
Helix 50	50	B	424	442	Right-handed alpha
Helix 51	51	B	466	468	Right-handed 310
Helix 52	52	C	44	51	Right-handed alpha
Helix 53	53	C	51	64	Right-handed alpha
Helix 54	54	C	82	85	Right-handed 310
Helix 55	55	C	86	91	Right-handed alpha
Helix 56	56	C	100	105	Right-handed 310
Helix 57	57	C	106	111	Right-handed alpha
Helix 58	58	C	114	118	Right-handed 310
Helix 59	59	C	119	134	Right-handed alpha
Helix 60	60	C	135	137	Right-handed 310
Helix 61	61	C	138	158	Right-handed alpha
Helix 62	62	C	167	184	Right-handed alpha
Helix 63	63	C	185	192	Right-handed alpha
Helix 64	64	C	193	207	Right-handed alpha
Helix 65	65	C	208	214	Right-handed 310
Helix 66	66	C	215	221	Right-handed 310
Helix 67	67	C	223	254	Right-handed alpha
Helix 68	68	C	260	267	Right-handed alpha
Helix 69	69	C	277	309	Right-handed alpha
Helix 70	70	C	312	324	Right-handed alpha
Helix 71	71	C	331	338	Right-handed alpha
Helix 72	72	C	339	353	Right-handed alpha
Helix 73	73	C	383	388	Right-handed alpha
Helix 74	74	C	417	421	Right-handed 310
Helix 75	75	C	424	442	Right-handed alpha
Helix 76	76	C	466	468	Right-handed 310
Helix 77	77	D	44	51	Right-handed alpha
Helix 78	78	D	51	64	Right-handed alpha
Helix 79	79	D	82	84	Right-handed 310
Helix 80	80	D	85	91	Right-handed alpha
Helix 81	81	D	100	105	Right-handed 310
Helix 82	82	D	106	111	Right-handed alpha
Helix 83	83	D	114	118	Right-handed 310
Helix 84	84	D	119	133	Right-handed alpha
Helix 85	85	D	134	139	Right-handed 310
Helix 86	86	D	141	158	Right-handed alpha
Helix 87	87	D	167	184	Right-handed alpha
Helix 88	88	D	185	192	Right-handed alpha
Helix 89	89	D	193	207	Right-handed alpha
Helix 90	90	D	208	214	Right-handed 310
Helix 91	91	D	215	221	Right-handed 310
Helix 92	92	D	223	254	Right-handed alpha
Helix 93	93	D	260	267	Right-handed alpha
Helix 94	94	D	277	309	Right-handed alpha
Helix 95	95	D	312	325	Right-handed alpha
Helix 96	96	D	331	338	Right-handed alpha
Helix 97	97	D	339	353	Right-handed alpha
Helix 98	98	D	383	388	Right-handed alpha
Helix 99	99	D	417	421	Right-handed 310
Helix 100	100	D	424	442	Right-handed alpha
Helix 101	101	D	466	468	Right-handed 310

There are 16 sheets in PDB entry 4G3J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	379	382	parallel
Strand 4	A	359	363	anti-parallel
Strand 5	A	97	98	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	166	first strand
Strand 2	A	470	475	anti-parallel
Strand 3	A	443	447	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	369	first strand
Strand 2	A	372	374	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	456	first strand
Strand 2	A	463	464	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	379	382	parallel
Strand 4	B	359	363	anti-parallel
Strand 5	B	97	98	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	470	475	anti-parallel
Strand 3	B	443	447	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	369	first strand
Strand 2	B	372	374	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	B	463	464	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	75	80	anti-parallel
Strand 3	C	379	382	parallel
Strand 4	C	359	363	anti-parallel
Strand 5	C	97	98	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	166	first strand
Strand 2	C	470	475	anti-parallel
Strand 3	C	443	447	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	369	first strand
Strand 2	C	372	374	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	456	first strand
Strand 2	C	463	464	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	72	first strand
Strand 2	D	75	80	anti-parallel
Strand 3	D	379	382	parallel
Strand 4	D	359	363	anti-parallel
Strand 5	D	97	98	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	166	first strand
Strand 2	D	470	475	anti-parallel
Strand 3	D	443	447	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	367	369	first strand
Strand 2	D	372	374	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	456	first strand
Strand 2	D	463	464	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4G3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
4G3J