Analysis of interatomic Contacts of Structural Units in PDB entry:
4G3U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4G3U entry

There are 2 chains in PDB entry 4G3U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 75LEU 468
B
 GLY 75LEU 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 4G3U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
104 113Right-handed alpha
Helix 2
2
A
129 137Right-handed alpha
Helix 3
3
A
142 147Right-handed alpha
Helix 4
4
A
148 151Right-handed 310
Helix 5
5
A
174 184Right-handed alpha
Helix 6
6
A
215 223Right-handed alpha
Helix 7
7
A
226 231Right-handed 310
Helix 8
8
A
259 263Right-handed 310
Helix 9
9
A
316 321Right-handed alpha
Helix 10
10
A
350 365Right-handed alpha
Helix 11
11
A
402 417Right-handed alpha
Helix 12
12
A
430 438Right-handed alpha
Helix 13
13
A
440 452Right-handed alpha
Helix 14
14
A
459 465Right-handed alpha
Helix 15
15
B
104 113Right-handed alpha
Helix 16
16
B
129 137Right-handed alpha
Helix 17
17
B
142 147Right-handed alpha
Helix 18
18
B
148 151Right-handed 310
Helix 19
19
B
174 184Right-handed alpha
Helix 20
20
B
215 223Right-handed alpha
Helix 21
21
B
226 231Right-handed 310
Helix 22
22
B
259 263Right-handed 310
Helix 23
23
B
316 321Right-handed alpha
Helix 24
24
B
350 365Right-handed alpha
Helix 25
25
B
402 417Right-handed alpha
Helix 26
26
B
430 438Right-handed alpha
Helix 27
27
B
440 452Right-handed alpha
Helix 28
28
B
459 465Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 4G3U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
96 100anti-parallel
Strand 3
A
190 197anti-parallel
Strand 4
A
153 159anti-parallel
Strand 5
A
165 168anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
199 200anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 315first strand
Strand 2
A
206 212anti-parallel
Strand 3
A
250 257anti-parallel
Strand 4
A
233 238anti-parallel
Strand 5
A
371 376anti-parallel
Strand 6
A
390 398anti-parallel
Strand 7
A
339 347anti-parallel
Strand 8
A
420 421anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 91first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
190 197anti-parallel
Strand 4
B
153 159anti-parallel
Strand 5
B
165 168anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
199 200anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 315first strand
Strand 2
B
206 212anti-parallel
Strand 3
B
250 257anti-parallel
Strand 4
B
233 238anti-parallel
Strand 5
B
371 376anti-parallel
Strand 6
B
390 398anti-parallel
Strand 7
B
339 347anti-parallel
Strand 8
B
420 421anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il