Analysis of interatomic Contacts of Structural Units in PDB entry:
4G42


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4G42 entry

There are 6 chains in PDB entry 4G42 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1LYS 271
B
 ASP 1GLU 97
D
 GLU 1LEU 272
E
 ASP 1GLU 97
C
 ILE 1ASP 8
F
 ILE 1ASP 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 4G42. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 53Right-handed alpha
Helix 2
2
A
55 84Right-handed alpha
Helix 3
3
A
134 136Right-handed 310
Helix 4
4
A
137 147Right-handed alpha
Helix 5
5
A
148 159Right-handed alpha
Helix 6
6
A
159 172Right-handed alpha
Helix 7
7
A
172 177Right-handed alpha
Helix 8
8
A
248 252Right-handed 310
Helix 9
9
D
47 53Right-handed alpha
Helix 10
10
D
55 84Right-handed alpha
Helix 11
11
D
125 128Right-handed 310
Helix 12
12
D
134 136Right-handed 310
Helix 13
13
D
137 146Right-handed alpha
Helix 14
14
D
148 159Right-handed alpha
Helix 15
15
D
159 172Right-handed alpha
Helix 16
16
D
172 178Right-handed alpha
Helix 17
17
D
249 251Right-handed 310
Back to top of page

There are 13 sheets in PDB entry 4G42. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
22 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
92 101anti-parallel
Strand 6
A
107 115anti-parallel
Strand 7
A
118 123anti-parallel
Strand 8
A
130 132anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 187first strand
Strand 2
A
194 204anti-parallel
Strand 3
A
237 245anti-parallel
Strand 4
A
225 226anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
194 204anti-parallel
Strand 3
A
237 245anti-parallel
Strand 4
A
230 231anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 214first strand
Strand 2
A
254 258anti-parallel
Strand 3
A
266 269anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
20 29anti-parallel
Strand 3
B
61 69anti-parallel
Strand 4
B
49 55anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
35 40anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
90 93anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 45first strand
Strand 2
D
31 37anti-parallel
Strand 3
D
22 28anti-parallel
Strand 4
D
3 12anti-parallel
Strand 5
D
92 101anti-parallel
Strand 6
D
107 115anti-parallel
Strand 7
D
118 124anti-parallel
Strand 8
D
129 132anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 190first strand
Strand 2
D
195 204anti-parallel
Strand 3
D
237 245anti-parallel
Strand 4
D
225 226anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 190first strand
Strand 2
D
195 204anti-parallel
Strand 3
D
237 245anti-parallel
Strand 4
D
230 231anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
218 219first strand
Strand 2
D
209 215anti-parallel
Strand 3
D
253 259anti-parallel
Strand 4
D
266 269anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 10first strand
Strand 2
E
20 29anti-parallel
Strand 3
E
61 69anti-parallel
Strand 4
E
49 50anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 10first strand
Strand 2
E
20 29anti-parallel
Strand 3
E
61 69anti-parallel
Strand 4
E
54 55anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
43 44first strand
Strand 2
E
35 40anti-parallel
Strand 3
E
77 82anti-parallel
Strand 4
E
90 93anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il