Analysis of interatomic Contacts of Structural Units in PDB entry:
4G59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4G59 entry

There are 4 chains in PDB entry 4G59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLU 173
C
 SER 1GLU 264
B
 ALA 2GLU 173
D
 SER 1GLU 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4G59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 78Right-handed alpha
Helix 2
2
A
133 144Right-handed alpha
Helix 3
3
A
146 155Right-handed alpha
Helix 4
4
A
155 160Right-handed alpha
Helix 5
5
A
160 171Right-handed alpha
Helix 6
6
C
61 64Right-handed 310
Helix 7
7
C
65 87Right-handed alpha
Helix 8
8
C
139 147Right-handed alpha
Helix 9
9
C
151 157Right-handed alpha
Helix 10
10
C
158 177Right-handed alpha
Helix 11
11
C
178 182Right-handed 310
Helix 12
12
B
53 79Right-handed alpha
Helix 13
13
B
133 144Right-handed alpha
Helix 14
14
B
146 155Right-handed alpha
Helix 15
15
B
155 160Right-handed alpha
Helix 16
16
B
160 171Right-handed alpha
Helix 17
17
D
61 64Right-handed 310
Helix 18
18
D
65 87Right-handed alpha
Helix 19
19
D
139 145Right-handed alpha
Helix 20
20
D
151 158Right-handed alpha
Helix 21
21
D
158 177Right-handed alpha
Helix 22
22
D
238 241Right-handed 310
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There are 8 sheets in PDB entry 4G59. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 37first strand
Strand 2
A
22 28anti-parallel
Strand 3
A
5 11anti-parallel
Strand 4
A
92 98anti-parallel
Strand 5
A
109 114anti-parallel
Strand 6
A
118 123anti-parallel
Strand 7
A
128 131anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 9first strand
Strand 2
C
256 262anti-parallel
Strand 3
C
248 251anti-parallel
Strand 4
C
208 211anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 55first strand
Strand 2
C
46 48anti-parallel
Strand 3
C
32 38anti-parallel
Strand 4
C
20 29anti-parallel
Strand 5
C
93 100anti-parallel
Strand 6
C
105 112anti-parallel
Strand 7
C
115 121anti-parallel
Strand 8
C
126 128anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 189first strand
Strand 2
C
194 201anti-parallel
Strand 3
C
229 236anti-parallel
Strand 4
C
218 223anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 37first strand
Strand 2
B
22 28anti-parallel
Strand 3
B
5 11anti-parallel
Strand 4
B
92 98anti-parallel
Strand 5
B
109 114anti-parallel
Strand 6
B
118 123anti-parallel
Strand 7
B
128 131anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 9first strand
Strand 2
D
256 262anti-parallel
Strand 3
D
248 251anti-parallel
Strand 4
D
208 211anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 56first strand
Strand 2
D
44 48anti-parallel
Strand 3
D
32 39anti-parallel
Strand 4
D
20 29anti-parallel
Strand 5
D
93 100anti-parallel
Strand 6
D
105 112anti-parallel
Strand 7
D
115 120anti-parallel
Strand 8
D
126 128anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 189first strand
Strand 2
D
194 201anti-parallel
Strand 3
D
229 236anti-parallel
Strand 4
D
218 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il