Analysis of interatomic Contacts of Structural Units in PDB entry:
4G6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4G6V entry

There are 8 chains in PDB entry 4G6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 163	PRO 294
B	ALA 2	LEU 104
C	GLY 163	PRO 294
D	ALA 2	LEU 104
E	GLY 163	PRO 294
F	ALA 2	THR 102
G	GLY 163	PRO 294
H	ALA 2	THR 102

There are 32 helices in PDB entry 4G6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	177	196	Right-handed alpha
Helix 2	2	A	231	245	Right-handed alpha
Helix 3	3	A	261	272	Right-handed alpha
Helix 4	4	B	12	27	Right-handed alpha
Helix 5	5	B	27	32	Right-handed alpha
Helix 6	6	B	44	54	Right-handed alpha
Helix 7	7	B	68	73	Right-handed 310
Helix 8	8	B	74	85	Right-handed alpha
Helix 9	9	C	177	196	Right-handed alpha
Helix 10	10	C	231	245	Right-handed alpha
Helix 11	11	C	261	272	Right-handed alpha
Helix 12	12	D	12	27	Right-handed alpha
Helix 13	13	D	27	32	Right-handed alpha
Helix 14	14	D	44	54	Right-handed alpha
Helix 15	15	D	68	73	Right-handed 310
Helix 16	16	D	74	85	Right-handed alpha
Helix 17	17	E	177	197	Right-handed alpha
Helix 18	18	E	231	245	Right-handed alpha
Helix 19	19	E	261	272	Right-handed alpha
Helix 20	20	F	12	27	Right-handed alpha
Helix 21	21	F	27	32	Right-handed alpha
Helix 22	22	F	44	54	Right-handed alpha
Helix 23	23	F	68	73	Right-handed 310
Helix 24	24	F	74	86	Right-handed alpha
Helix 25	25	G	177	197	Right-handed alpha
Helix 26	26	G	231	245	Right-handed alpha
Helix 27	27	G	261	272	Right-handed alpha
Helix 28	28	H	12	27	Right-handed alpha
Helix 29	29	H	27	32	Right-handed alpha
Helix 30	30	H	44	54	Right-handed alpha
Helix 31	31	H	68	73	Right-handed 310
Helix 32	32	H	74	86	Right-handed alpha

There are 12 sheets in PDB entry 4G6V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	200	203	parallel
Strand 3	A	215	217	anti-parallel
Strand 4	A	220	225	anti-parallel
Strand 5	A	250	254	parallel
Strand 6	A	280	283	parallel
Strand 7	A	289	292	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	60	66	anti-parallel
Strand 3	B	41	42	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	60	66	anti-parallel
Strand 3	B	4	9	anti-parallel
Strand 4	B	91	95	anti-parallel
Strand 5	B	99	100	anti-parallel

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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	166	first strand
Strand 2	C	200	203	parallel
Strand 3	C	215	217	anti-parallel
Strand 4	C	220	225	anti-parallel
Strand 5	C	250	254	parallel
Strand 6	C	280	283	parallel
Strand 7	C	289	292	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	37	first strand
Strand 2	D	60	66	anti-parallel
Strand 3	D	41	42	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	37	first strand
Strand 2	D	60	66	anti-parallel
Strand 3	D	4	9	anti-parallel
Strand 4	D	91	95	anti-parallel
Strand 5	D	99	100	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	166	first strand
Strand 2	E	200	203	parallel
Strand 3	E	215	217	anti-parallel
Strand 4	E	220	225	anti-parallel
Strand 5	E	250	254	parallel
Strand 6	E	280	283	parallel
Strand 7	E	289	292	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	37	first strand
Strand 2	F	60	66	anti-parallel
Strand 3	F	41	42	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	37	first strand
Strand 2	F	60	66	anti-parallel
Strand 3	F	4	9	anti-parallel
Strand 4	F	91	95	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	164	166	first strand
Strand 2	G	200	203	parallel
Strand 3	G	215	217	anti-parallel
Strand 4	G	220	225	anti-parallel
Strand 5	G	250	254	parallel
Strand 6	G	280	283	parallel
Strand 7	G	289	292	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	37	first strand
Strand 2	H	60	66	anti-parallel
Strand 3	H	41	42	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	37	first strand
Strand 2	H	60	66	anti-parallel
Strand 3	H	4	9	anti-parallel
Strand 4	H	91	95	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4G6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
4G6V