Analysis of interatomic Contacts of Structural Units in PDB entry:
4G80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4G80 entry

There are 12 chains in PDB entry 4G80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
S	GLN 106	ILE 233
A	GLU 1	PRO 224
B	ASP 1	ARG 211
C	VAL 2	PRO 224
D	ASP 1	ARG 211
T	GLN 106	SER 244
E	GLU 1	PRO 224
F	ASP 1	ARG 211
G	GLU 1	PRO 224
H	ASP 1	ARG 211
I	GLN 106	SER 244
J	GLN 106	SER 244

There are 51 helices in PDB entry 4G80. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	S	109	114	Right-handed alpha
Helix 2	2	S	115	138	Right-handed alpha
Helix 3	3	S	145	171	Right-handed alpha
Helix 4	4	S	180	202	Right-handed alpha
Helix 5	5	S	214	230	Right-handed alpha
Helix 6	6	A	87	91	Right-handed 310
Helix 7	7	A	167	169	Right-handed 310
Helix 8	8	A	198	200	Right-handed 310
Helix 9	9	A	212	215	Right-handed 310
Helix 10	10	B	79	83	Right-handed 310
Helix 11	11	B	121	128	Right-handed alpha
Helix 12	12	B	183	188	Right-handed alpha
Helix 13	13	C	87	91	Right-handed 310
Helix 14	14	C	167	169	Right-handed 310
Helix 15	15	C	198	200	Right-handed 310
Helix 16	16	C	212	215	Right-handed 310
Helix 17	17	D	79	83	Right-handed 310
Helix 18	18	D	121	128	Right-handed alpha
Helix 19	19	D	183	188	Right-handed alpha
Helix 20	20	T	109	114	Right-handed alpha
Helix 21	21	T	115	138	Right-handed alpha
Helix 22	22	T	145	171	Right-handed alpha
Helix 23	23	T	180	202	Right-handed alpha
Helix 24	24	T	214	230	Right-handed alpha
Helix 25	25	T	236	244	Right-handed alpha
Helix 26	26	E	87	91	Right-handed 310
Helix 27	27	E	167	169	Right-handed 310
Helix 28	28	E	198	200	Right-handed 310
Helix 29	29	E	212	215	Right-handed 310
Helix 30	30	F	79	83	Right-handed 310
Helix 31	31	F	121	128	Right-handed alpha
Helix 32	32	F	183	188	Right-handed alpha
Helix 33	33	G	87	91	Right-handed 310
Helix 34	34	G	167	169	Right-handed 310
Helix 35	35	G	198	200	Right-handed 310
Helix 36	36	G	212	215	Right-handed 310
Helix 37	37	H	79	83	Right-handed 310
Helix 38	38	H	121	128	Right-handed alpha
Helix 39	39	H	183	188	Right-handed alpha
Helix 40	40	I	109	114	Right-handed alpha
Helix 41	41	I	115	138	Right-handed alpha
Helix 42	42	I	145	171	Right-handed alpha
Helix 43	43	I	180	202	Right-handed alpha
Helix 44	44	I	214	230	Right-handed alpha
Helix 45	45	I	236	244	Right-handed alpha
Helix 46	46	J	109	114	Right-handed alpha
Helix 47	47	J	115	138	Right-handed alpha
Helix 48	48	J	145	171	Right-handed alpha
Helix 49	49	J	180	202	Right-handed alpha
Helix 50	50	J	214	230	Right-handed alpha
Helix 51	51	J	236	244	Right-handed alpha

There are 34 sheets in PDB entry 4G80. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	118	122	parallel
Strand 3	A	92	98	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	135	first strand
Strand 2	A	146	156	anti-parallel
Strand 3	A	187	196	anti-parallel
Strand 4	A	174	176	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	135	first strand
Strand 2	A	146	156	anti-parallel
Strand 3	A	187	196	anti-parallel
Strand 4	A	180	181	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	205	211	anti-parallel
Strand 3	A	216	222	anti-parallel
Strand 4	H	153	156	parallel
Strand 5	H	144	150	anti-parallel
Strand 6	H	192	198	anti-parallel
Strand 7	H	205	209	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	102	107	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	49	anti-parallel
Strand 6	B	53	54	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	173	182	anti-parallel
Strand 4	B	159	163	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	144	150	anti-parallel
Strand 3	B	192	198	anti-parallel
Strand 4	B	205	209	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	118	122	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	135	first strand
Strand 2	C	146	156	anti-parallel
Strand 3	C	187	196	anti-parallel
Strand 4	C	174	176	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	165	first strand
Strand 2	C	205	211	anti-parallel
Strand 3	C	216	222	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	173	182	anti-parallel
Strand 4	D	159	163	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	155	first strand
Strand 2	D	144	150	anti-parallel
Strand 3	D	192	198	anti-parallel
Strand 4	D	205	209	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	118	122	parallel
Strand 3	E	92	98	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	135	first strand
Strand 2	E	146	156	anti-parallel
Strand 3	E	187	196	anti-parallel
Strand 4	E	174	176	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	135	first strand
Strand 2	E	146	156	anti-parallel
Strand 3	E	187	196	anti-parallel
Strand 4	E	180	181	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	165	first strand
Strand 2	E	205	211	anti-parallel
Strand 3	E	216	222	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	102	107	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	49	anti-parallel
Strand 6	F	53	54	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	129	139	anti-parallel
Strand 3	F	173	182	anti-parallel
Strand 4	F	159	163	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	155	first strand
Strand 2	F	144	150	anti-parallel
Strand 3	F	192	198	anti-parallel
Strand 4	F	205	209	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	118	122	parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	51	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	135	first strand
Strand 2	G	146	156	anti-parallel
Strand 3	G	187	196	anti-parallel
Strand 4	G	174	176	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	135	first strand
Strand 2	G	146	156	anti-parallel
Strand 3	G	187	196	anti-parallel
Strand 4	G	180	181	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	165	first strand
Strand 2	G	205	211	anti-parallel
Strand 3	G	216	222	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	67	anti-parallel

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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	13	first strand
Strand 2	H	102	106	parallel
Strand 3	H	85	90	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	45	49	anti-parallel
Strand 6	H	53	54	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	118	first strand
Strand 2	H	129	139	anti-parallel
Strand 3	H	173	182	anti-parallel
Strand 4	H	159	163	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4G80

Analysis of interatomic Contacts of Structural Units in PDB entry:
4G80