Analysis of interatomic Contacts of Structural Units in PDB entry:
4G8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4G8D entry

There are 2 chains in PDB entry 4G8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2HIS 278
B
 THR 2HIS 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 4G8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 39Right-handed 310
Helix 2
2
A
40 46Right-handed alpha
Helix 3
3
A
46 51Right-handed alpha
Helix 4
4
A
70 75Right-handed alpha
Helix 5
5
A
76 91Right-handed alpha
Helix 6
6
A
102 115Right-handed alpha
Helix 7
7
A
130 132Right-handed 310
Helix 8
8
A
133 138Right-handed alpha
Helix 9
9
A
141 147Right-handed alpha
Helix 10
10
A
153 166Right-handed alpha
Helix 11
11
A
171 180Right-handed alpha
Helix 12
12
A
181 195Right-handed alpha
Helix 13
13
A
199 207Right-handed alpha
Helix 14
14
A
223 228Right-handed alpha
Helix 15
15
A
235 239Right-handed 310
Helix 16
16
A
249 254Right-handed alpha
Helix 17
17
A
254 272Right-handed alpha
Helix 18
18
B
36 39Right-handed 310
Helix 19
19
B
40 46Right-handed alpha
Helix 20
20
B
46 51Right-handed alpha
Helix 21
21
B
70 75Right-handed alpha
Helix 22
22
B
76 92Right-handed alpha
Helix 23
23
B
102 115Right-handed alpha
Helix 24
24
B
130 132Right-handed 310
Helix 25
25
B
133 138Right-handed alpha
Helix 26
26
B
141 147Right-handed alpha
Helix 27
27
B
153 166Right-handed alpha
Helix 28
28
B
170 180Right-handed alpha
Helix 29
29
B
181 194Right-handed alpha
Helix 30
30
B
199 207Right-handed alpha
Helix 31
31
B
223 228Right-handed alpha
Helix 32
32
B
235 239Right-handed 310
Helix 33
33
B
249 254Right-handed alpha
Helix 34
34
B
254 271Right-handed alpha
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There are 2 sheets in PDB entry 4G8D. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
13 19anti-parallel
Strand 3
A
52 57anti-parallel
Strand 4
A
24 30parallel
Strand 5
A
97 101parallel
Strand 6
A
120 124parallel
Strand 7
A
211 216parallel
Strand 8
A
241 243parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 10first strand
Strand 2
B
13 19anti-parallel
Strand 3
B
52 57anti-parallel
Strand 4
B
24 30parallel
Strand 5
B
97 101parallel
Strand 6
B
120 124parallel
Strand 7
B
211 216parallel
Strand 8
B
241 243parallel
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