Analysis of interatomic Contacts of Structural Units in PDB entry:
4G8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4G8E entry

There are 2 chains in PDB entry 4G8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1PRO 217
B
 GLY 3ASP 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 4G8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
95 99Right-handed 310
Helix 2
2
B
95 99Right-handed 310
Helix 3
3
B
134 138Right-handed 310
Helix 4
4
B
149 157Right-handed alpha
Helix 5
5
B
216 221Right-handed alpha
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There are 9 sheets in PDB entry 4G8E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
86 91anti-parallel
Strand 4
A
79 84anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
120 125parallel
Strand 3
A
100 108anti-parallel
Strand 4
A
39 44anti-parallel
Strand 5
A
51 56anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
120 125parallel
Strand 3
A
100 108anti-parallel
Strand 4
A
113 116anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 178first strand
Strand 2
A
183 192anti-parallel
Strand 3
A
148 152anti-parallel
Strand 4
A
134 140anti-parallel
Strand 5
B
142 147anti-parallel
Strand 6
B
158 168anti-parallel
Strand 7
B
206 215anti-parallel
Strand 8
B
188 190anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 178first strand
Strand 2
A
183 192anti-parallel
Strand 3
A
148 152anti-parallel
Strand 4
A
134 140anti-parallel
Strand 5
B
142 147anti-parallel
Strand 6
B
158 168anti-parallel
Strand 7
B
206 215anti-parallel
Strand 8
B
195 196anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
87 91anti-parallel
Strand 4
B
76 80anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
127 132parallel
Strand 3
B
100 107anti-parallel
Strand 4
B
31 44anti-parallel
Strand 5
B
50 58anti-parallel
Strand 6
B
61 67anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
127 132parallel
Strand 3
B
100 107anti-parallel
Strand 4
B
122 123anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
173 179anti-parallel
Strand 3
B
225 232anti-parallel
Strand 4
B
251 258anti-parallel
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